Analysis of interatomic Contacts of Structural Units in PDB entry:
5CFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CFC entry

There are 4 chains in PDB entry 5CFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 260
B
 SER 1GLN 232
C
 SER 11VAL 268
D
 GLY 15ASN 38
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5CFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
113 119Right-handed alpha
Helix 4
AA4
A
165 169Right-handed 310
Helix 5
AA5
B
44 49Right-handed alpha
Helix 6
AA6
B
87 91Right-handed 310
Helix 7
AA7
B
93 100Right-handed alpha
Helix 8
AA8
B
139 144Right-handed alpha
Helix 9
AA9
C
36 38Right-handed 310
Helix 10
AB1
C
85 89Right-handed 310
Helix 11
AB2
C
90 92Right-handed 310
Helix 12
AB3
C
93 101Right-handed alpha
Helix 13
AB4
C
160 164Right-handed 310
Helix 14
AB5
C
173 178Right-handed 310
Helix 15
AB6
C
186 193Right-handed 310
Helix 16
AB7
C
220 224Right-handed 310
Helix 17
AB8
D
26 31Right-handed alpha
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There are 15 sheets in PDB entry 5CFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
B
158 163anti-parallel
Strand 3
B
109 115anti-parallel
Strand 4
B
206 214anti-parallel
Strand 5
B
52 53anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
B
158 163anti-parallel
Strand 3
B
109 115anti-parallel
Strand 4
B
206 214anti-parallel
Strand 5
B
66 69anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 48first strand
Strand 2
A
235 251anti-parallel
Strand 3
A
122 135anti-parallel
Strand 4
A
201 202anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 192first strand
Strand 2
A
122 135anti-parallel
Strand 3
A
235 251anti-parallel
Strand 4
B
40 41anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
64 65anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
228 232anti-parallel
Strand 3
A
142 148anti-parallel
Strand 4
A
174 178anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
91 92anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
D
33 34parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
63 64anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
187 197anti-parallel
Strand 3
B
122 130anti-parallel
Strand 4
B
147 152anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
219 223anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 19first strand
Strand 2
C
22 26anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 34first strand
Strand 2
C
205 210parallel
Strand 3
C
103 115anti-parallel
Strand 4
C
247 263anti-parallel
Strand 5
C
63 70anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 84first strand
Strand 2
C
227 238anti-parallel
Strand 3
C
123 132anti-parallel
Strand 4
C
195 199anti-parallel
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