Analysis of interatomic Contacts of Structural Units in PDB entry:
5CFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CFE entry

There is 1 chain in PDB entry 5CFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5CFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed alpha
Helix 2
AA2
A
19 28Right-handed alpha
Helix 3
AA3
A
83 87Right-handed 310
Helix 4
AA4
A
111 115Right-handed 310
Helix 5
AA5
A
116 138Right-handed alpha
Helix 6
AA6
A
151 155Right-handed 310
Helix 7
AA7
A
157 161Right-handed 310
Helix 8
AA8
A
168 181Right-handed alpha
Helix 9
AA9
A
186 191Right-handed alpha
Helix 10
AB1
A
224 227Right-handed 310
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There are 3 sheets in PDB entry 5CFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
66 70anti-parallel
Strand 3
A
31 35anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
246 250anti-parallel
Strand 6
A
229 234anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
92 96anti-parallel
Strand 3
A
101 106anti-parallel
Strand 4
A
140 145parallel
Strand 5
A
217 222anti-parallel
Strand 6
A
183 185anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
213 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il