Analysis of interatomic Contacts of Structural Units in PDB entry:
5CFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CFF entry

There are 8 chains in PDB entry 5CFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 503SER 589
B
 GLY 501SER 588
C
 PRO 502SER 588
D
 PRO 502SER 589
E
 GLY 949LEU 1018
F
 PRO 948LEU 1018
G
 GLY 949LEU 1018
H
 GLY 949LEU 1018
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5CFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
503 589Right-handed alpha
Helix 2
AA2
B
502 588Right-handed alpha
Helix 3
AA3
C
503 587Right-handed alpha
Helix 4
AA4
D
503 589Right-handed alpha
Helix 5
AA5
E
950 962Right-handed alpha
Helix 6
AA6
E
999 1018Right-handed alpha
Helix 7
AA7
F
950 963Right-handed alpha
Helix 8
AA8
F
999 1018Right-handed alpha
Helix 9
AA9
G
950 962Right-handed alpha
Helix 10
AB1
G
999 1018Right-handed alpha
Helix 11
AB2
H
950 963Right-handed alpha
Helix 12
AB3
H
999 1018Right-handed alpha
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There are 4 sheets in PDB entry 5CFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
966 971first strand
Strand 2
E
979 985anti-parallel
Strand 3
E
991 997anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
966 971first strand
Strand 2
F
979 985anti-parallel
Strand 3
F
991 997anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
966 971first strand
Strand 2
G
979 985anti-parallel
Strand 3
G
991 997anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
966 971first strand
Strand 2
H
979 985anti-parallel
Strand 3
H
991 997anti-parallel
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