Analysis of interatomic Contacts of Structural Units in PDB entry:
5CFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CFI entry

There are 4 chains in PDB entry 5CFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4GLU 150
B
 ILE 5LYS 149
C
 ILE 6LYS 149
D
 ILE 5ASN 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5CFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 70Right-handed alpha
Helix 2
AA2
A
72 74Right-handed 310
Helix 3
AA3
A
123 127Right-handed 310
Helix 4
AA4
A
133 148Right-handed alpha
Helix 5
AA5
B
56 70Right-handed alpha
Helix 6
AA6
B
72 74Right-handed 310
Helix 7
AA7
B
123 127Right-handed 310
Helix 8
AA8
B
133 149Right-handed alpha
Helix 9
AA9
C
56 70Right-handed alpha
Helix 10
AB1
C
72 74Right-handed 310
Helix 11
AB2
C
123 131Right-handed 310
Helix 12
AB3
C
133 148Right-handed alpha
Helix 13
AB4
D
56 69Right-handed alpha
Helix 14
AB5
D
72 74Right-handed 310
Helix 15
AB6
D
124 128Right-handed 310
Helix 16
AB7
D
133 147Right-handed alpha
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There are 8 sheets in PDB entry 5CFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
6 16anti-parallel
Strand 4
A
92 103parallel
Strand 5
A
76 89anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
6 16anti-parallel
Strand 3
A
30 37anti-parallel
Strand 4
A
116 122anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
30 37anti-parallel
Strand 3
B
6 16anti-parallel
Strand 4
B
92 103parallel
Strand 5
B
76 89anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
6 16anti-parallel
Strand 3
B
30 37anti-parallel
Strand 4
B
116 122anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 45first strand
Strand 2
C
30 37anti-parallel
Strand 3
C
7 16anti-parallel
Strand 4
C
95 103parallel
Strand 5
C
76 85anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 50first strand
Strand 2
C
7 16anti-parallel
Strand 3
C
30 37anti-parallel
Strand 4
C
116 122anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 50first strand
Strand 2
D
6 14anti-parallel
Strand 3
D
94 103parallel
Strand 4
D
76 87anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 45first strand
Strand 2
D
32 37anti-parallel
Strand 3
D
116 122anti-parallel
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