Analysis of interatomic Contacts of Structural Units in PDB entry:
5CFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CFL entry

There are 2 chains in PDB entry 5CFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 191GLY 377
B
 GLY 191GLY 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5CFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
194 205Right-handed alpha
Helix 2
AA2
A
206 211Right-handed alpha
Helix 3
AA3
A
213 219Right-handed alpha
Helix 4
AA4
A
221 227Right-handed alpha
Helix 5
AA5
A
304 315Right-handed alpha
Helix 6
AA6
A
320 341Right-handed alpha
Helix 7
AA7
A
342 346Right-handed 310
Helix 8
AA8
A
359 370Right-handed alpha
Helix 9
AA9
B
194 205Right-handed alpha
Helix 10
AB1
B
206 211Right-handed alpha
Helix 11
AB2
B
213 219Right-handed alpha
Helix 12
AB3
B
221 227Right-handed alpha
Helix 13
AB4
B
304 315Right-handed alpha
Helix 14
AB5
B
320 341Right-handed alpha
Helix 15
AB6
B
342 346Right-handed 310
Helix 16
AB7
B
359 370Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5CFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 264first strand
Strand 2
A
283 287anti-parallel
Strand 3
A
295 301anti-parallel
Strand 4
A
230 239parallel
Strand 5
A
349 354parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 272first strand
Strand 2
A
276 280anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 264first strand
Strand 2
B
283 287anti-parallel
Strand 3
B
295 301anti-parallel
Strand 4
B
230 239parallel
Strand 5
B
349 354parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 272first strand
Strand 2
B
276 280anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il