Analysis of interatomic Contacts of Structural Units in PDB entry:
5CG0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CG0 entry

There are 6 chains in PDB entry 5CG0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 22	HIS 509
B	GLN 22	HIS 509
C	GLN 22	HIS 509
D	ARG 23	GLY 508
E	ARG 23	GLU 507
F	ARG 23	TYR 494

There are126 helices in PDB entry 5CG0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	41	Right-handed alpha
Helix 2	AA2	A	52	61	Right-handed alpha
Helix 3	AA3	A	62	65	Right-handed 310
Helix 4	AA4	A	76	92	Right-handed alpha
Helix 5	AA5	A	101	106	Right-handed alpha
Helix 6	AA6	A	115	132	Right-handed alpha
Helix 7	AA7	A	146	152	Right-handed alpha
Helix 8	AA8	A	153	158	Right-handed 310
Helix 9	AA9	A	159	176	Right-handed alpha
Helix 10	AB1	A	187	197	Right-handed alpha
Helix 11	AB2	A	210	234	Right-handed alpha
Helix 12	AB3	A	234	239	Right-handed alpha
Helix 13	AB4	A	257	272	Right-handed alpha
Helix 14	AB5	A	272	281	Right-handed alpha
Helix 15	AB6	A	287	302	Right-handed alpha
Helix 16	AB7	A	312	320	Right-handed alpha
Helix 17	AB8	A	349	355	Right-handed alpha
Helix 18	AB9	A	377	390	Right-handed alpha
Helix 19	AC1	A	414	433	Right-handed alpha
Helix 20	AC2	A	451	455	Right-handed 310
Helix 21	AC3	A	477	490	Right-handed alpha
Helix 22	AC4	B	36	41	Right-handed alpha
Helix 23	AC5	B	52	61	Right-handed alpha
Helix 24	AC6	B	62	65	Right-handed 310
Helix 25	AC7	B	76	92	Right-handed alpha
Helix 26	AC8	B	101	106	Right-handed alpha
Helix 27	AC9	B	115	132	Right-handed alpha
Helix 28	AD1	B	146	152	Right-handed alpha
Helix 29	AD2	B	153	158	Right-handed 310
Helix 30	AD3	B	159	176	Right-handed alpha
Helix 31	AD4	B	187	193	Right-handed alpha
Helix 32	AD5	B	210	234	Right-handed alpha
Helix 33	AD6	B	234	239	Right-handed alpha
Helix 34	AD7	B	257	272	Right-handed alpha
Helix 35	AD8	B	272	281	Right-handed alpha
Helix 36	AD9	B	287	301	Right-handed alpha
Helix 37	AE1	B	312	320	Right-handed alpha
Helix 38	AE2	B	349	355	Right-handed alpha
Helix 39	AE3	B	377	390	Right-handed alpha
Helix 40	AE4	B	414	434	Right-handed alpha
Helix 41	AE5	B	451	455	Right-handed 310
Helix 42	AE6	B	477	490	Right-handed alpha
Helix 43	AE7	C	36	41	Right-handed alpha
Helix 44	AE8	C	52	61	Right-handed alpha
Helix 45	AE9	C	62	65	Right-handed 310
Helix 46	AF1	C	76	92	Right-handed alpha
Helix 47	AF2	C	101	106	Right-handed alpha
Helix 48	AF3	C	115	132	Right-handed alpha
Helix 49	AF4	C	146	152	Right-handed alpha
Helix 50	AF5	C	153	158	Right-handed 310
Helix 51	AF6	C	159	176	Right-handed alpha
Helix 52	AF7	C	187	196	Right-handed alpha
Helix 53	AF8	C	210	234	Right-handed alpha
Helix 54	AF9	C	234	239	Right-handed alpha
Helix 55	AG1	C	257	272	Right-handed alpha
Helix 56	AG2	C	272	281	Right-handed alpha
Helix 57	AG3	C	287	301	Right-handed alpha
Helix 58	AG4	C	312	320	Right-handed alpha
Helix 59	AG5	C	349	355	Right-handed alpha
Helix 60	AG6	C	377	390	Right-handed alpha
Helix 61	AG7	C	414	434	Right-handed alpha
Helix 62	AG8	C	451	455	Right-handed 310
Helix 63	AG9	C	477	490	Right-handed alpha
Helix 64	AH1	D	36	41	Right-handed alpha
Helix 65	AH2	D	52	61	Right-handed alpha
Helix 66	AH3	D	62	65	Right-handed 310
Helix 67	AH4	D	76	92	Right-handed alpha
Helix 68	AH5	D	101	106	Right-handed alpha
Helix 69	AH6	D	115	131	Right-handed alpha
Helix 70	AH7	D	146	152	Right-handed alpha
Helix 71	AH8	D	153	158	Right-handed 310
Helix 72	AH9	D	159	176	Right-handed alpha
Helix 73	AI1	D	187	196	Right-handed alpha
Helix 74	AI2	D	210	234	Right-handed alpha
Helix 75	AI3	D	234	239	Right-handed alpha
Helix 76	AI4	D	257	272	Right-handed alpha
Helix 77	AI5	D	272	281	Right-handed alpha
Helix 78	AI6	D	287	301	Right-handed alpha
Helix 79	AI7	D	312	320	Right-handed alpha
Helix 80	AI8	D	349	355	Right-handed alpha
Helix 81	AI9	D	377	390	Right-handed alpha
Helix 82	AJ1	D	414	433	Right-handed alpha
Helix 83	AJ2	D	451	455	Right-handed 310
Helix 84	AJ3	D	477	490	Right-handed alpha
Helix 85	AJ4	E	36	41	Right-handed alpha
Helix 86	AJ5	E	52	61	Right-handed alpha
Helix 87	AJ6	E	62	65	Right-handed 310
Helix 88	AJ7	E	76	92	Right-handed alpha
Helix 89	AJ8	E	101	106	Right-handed alpha
Helix 90	AJ9	E	115	132	Right-handed alpha
Helix 91	AK1	E	146	152	Right-handed alpha
Helix 92	AK2	E	153	158	Right-handed 310
Helix 93	AK3	E	159	176	Right-handed alpha
Helix 94	AK4	E	187	196	Right-handed alpha
Helix 95	AK5	E	210	234	Right-handed alpha
Helix 96	AK6	E	234	239	Right-handed alpha
Helix 97	AK7	E	257	272	Right-handed alpha
Helix 98	AK8	E	272	281	Right-handed alpha
Helix 99	AK9	E	287	301	Right-handed alpha
Helix 100	AL1	E	312	320	Right-handed alpha
Helix 101	AL2	E	349	355	Right-handed alpha
Helix 102	AL3	E	377	390	Right-handed alpha
Helix 103	AL4	E	414	434	Right-handed alpha
Helix 104	AL5	E	451	455	Right-handed 310
Helix 105	AL6	E	477	490	Right-handed alpha
Helix 106	AL7	F	36	41	Right-handed alpha
Helix 107	AL8	F	52	61	Right-handed alpha
Helix 108	AL9	F	62	65	Right-handed 310
Helix 109	AM1	F	76	90	Right-handed alpha
Helix 110	AM2	F	101	106	Right-handed alpha
Helix 111	AM3	F	115	132	Right-handed alpha
Helix 112	AM4	F	146	151	Right-handed alpha
Helix 113	AM5	F	152	158	Right-handed 310
Helix 114	AM6	F	159	176	Right-handed alpha
Helix 115	AM7	F	187	196	Right-handed alpha
Helix 116	AM8	F	210	234	Right-handed alpha
Helix 117	AM9	F	234	239	Right-handed alpha
Helix 118	AN1	F	257	272	Right-handed alpha
Helix 119	AN2	F	272	281	Right-handed alpha
Helix 120	AN3	F	287	302	Right-handed alpha
Helix 121	AN4	F	312	320	Right-handed alpha
Helix 122	AN5	F	349	355	Right-handed alpha
Helix 123	AN6	F	377	390	Right-handed alpha
Helix 124	AN7	F	414	434	Right-handed alpha
Helix 125	AN8	F	451	455	Right-handed 310
Helix 126	AN9	F	477	490	Right-handed alpha

There are 27 sheets in PDB entry 5CG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	95	99	parallel
Strand 3	A	135	141	parallel
Strand 4	A	181	186	parallel
Strand 5	A	241	247	parallel
Strand 6	A	326	329	parallel
Strand 7	A	395	399	parallel
Strand 8	A	438	444	parallel
Strand 9	A	30	34	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	333	337	parallel
Strand 3	A	357	359	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	373	374	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	405	first strand
Strand 2	A	458	459	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	465	first strand
Strand 2	A	474	476	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	95	99	parallel
Strand 3	B	135	141	parallel
Strand 4	B	181	186	parallel
Strand 5	B	241	247	parallel
Strand 6	B	326	329	parallel
Strand 7	B	395	400	parallel
Strand 8	B	438	444	parallel
Strand 9	B	30	34	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	333	337	parallel
Strand 3	B	357	359	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	405	first strand
Strand 2	B	458	459	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	465	first strand
Strand 2	B	474	476	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	95	99	parallel
Strand 3	C	135	141	parallel
Strand 4	C	181	186	parallel
Strand 5	C	241	247	parallel
Strand 6	C	326	329	parallel
Strand 7	C	395	400	parallel
Strand 8	C	438	443	parallel
Strand 9	C	30	34	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	333	337	parallel
Strand 3	C	357	359	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	405	first strand
Strand 2	C	458	459	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	463	465	first strand
Strand 2	C	474	476	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	95	99	parallel
Strand 3	D	135	141	parallel
Strand 4	D	181	186	parallel
Strand 5	D	241	247	parallel
Strand 6	D	326	329	parallel
Strand 7	D	395	399	parallel
Strand 8	D	438	444	parallel
Strand 9	D	30	34	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	253	first strand
Strand 2	D	333	337	parallel
Strand 3	D	357	359	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	366	first strand
Strand 2	D	373	374	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	405	first strand
Strand 2	D	458	459	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	463	465	first strand
Strand 2	D	474	476	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	95	99	parallel
Strand 3	E	135	141	parallel
Strand 4	E	181	186	parallel
Strand 5	E	241	247	parallel
Strand 6	E	326	329	parallel
Strand 7	E	395	399	parallel
Strand 8	E	438	444	parallel
Strand 9	E	30	34	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	253	first strand
Strand 2	E	333	337	parallel
Strand 3	E	357	359	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	404	405	first strand
Strand 2	E	458	459	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	463	465	first strand
Strand 2	E	474	476	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	95	99	parallel
Strand 3	F	135	141	parallel
Strand 4	F	181	186	parallel
Strand 5	F	241	247	parallel
Strand 6	F	326	329	parallel
Strand 7	F	395	400	parallel
Strand 8	F	438	444	parallel
Strand 9	F	30	34	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	250	253	first strand
Strand 2	F	333	337	parallel
Strand 3	F	357	359	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	365	366	first strand
Strand 2	F	373	374	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	404	405	first strand
Strand 2	F	458	459	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	463	465	first strand
Strand 2	F	475	476	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CG0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CG0