Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CGE entry

There are 6 chains in PDB entry 5CGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 264
B	MET 1	VAL 262
C	MET 1	VAL 262
E	MET 1	GLN 269
D	MET 1	ILE 259
F	MET 1	LEU 57

There are 81 helices in PDB entry 5CGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	11	Right-handed alpha
Helix 2	AA2	A	22	33	Right-handed alpha
Helix 3	AA3	A	42	53	Right-handed alpha
Helix 4	AA4	A	64	82	Right-handed alpha
Helix 5	AA5	A	91	94	Right-handed 310
Helix 6	AA6	A	95	109	Right-handed alpha
Helix 7	AA7	A	118	126	Right-handed alpha
Helix 8	AA8	A	141	154	Right-handed alpha
Helix 9	AA9	A	179	185	Right-handed 310
Helix 10	AB1	A	187	199	Right-handed alpha
Helix 11	AB2	A	207	228	Right-handed alpha
Helix 12	AB3	A	233	248	Right-handed alpha
Helix 13	AB4	A	249	257	Right-handed alpha
Helix 14	AB5	B	2	11	Right-handed alpha
Helix 15	AB6	B	22	33	Right-handed alpha
Helix 16	AB7	B	42	53	Right-handed alpha
Helix 17	AB8	B	64	82	Right-handed alpha
Helix 18	AB9	B	91	94	Right-handed 310
Helix 19	AC1	B	95	109	Right-handed alpha
Helix 20	AC2	B	118	128	Right-handed alpha
Helix 21	AC3	B	141	154	Right-handed alpha
Helix 22	AC4	B	179	185	Right-handed 310
Helix 23	AC5	B	187	199	Right-handed alpha
Helix 24	AC6	B	207	228	Right-handed alpha
Helix 25	AC7	B	233	248	Right-handed alpha
Helix 26	AC8	B	249	257	Right-handed alpha
Helix 27	AC9	C	2	11	Right-handed alpha
Helix 28	AD1	C	22	34	Right-handed alpha
Helix 29	AD2	C	42	44	Right-handed 310
Helix 30	AD3	C	45	52	Right-handed alpha
Helix 31	AD4	C	64	82	Right-handed alpha
Helix 32	AD5	C	91	94	Right-handed 310
Helix 33	AD6	C	95	109	Right-handed alpha
Helix 34	AD7	C	118	127	Right-handed alpha
Helix 35	AD8	C	141	154	Right-handed alpha
Helix 36	AD9	C	179	185	Right-handed 310
Helix 37	AE1	C	187	199	Right-handed alpha
Helix 38	AE2	C	207	228	Right-handed alpha
Helix 39	AE3	C	233	248	Right-handed alpha
Helix 40	AE4	C	249	257	Right-handed alpha
Helix 41	AE5	E	2	11	Right-handed alpha
Helix 42	AE6	E	22	33	Right-handed alpha
Helix 43	AE7	E	42	44	Right-handed 310
Helix 44	AE8	E	45	53	Right-handed alpha
Helix 45	AE9	E	64	82	Right-handed alpha
Helix 46	AF1	E	91	94	Right-handed 310
Helix 47	AF2	E	95	109	Right-handed alpha
Helix 48	AF3	E	118	126	Right-handed alpha
Helix 49	AF4	E	141	154	Right-handed alpha
Helix 50	AF5	E	179	185	Right-handed 310
Helix 51	AF6	E	187	199	Right-handed alpha
Helix 52	AF7	E	207	228	Right-handed alpha
Helix 53	AF8	E	233	248	Right-handed alpha
Helix 54	AF9	E	249	257	Right-handed alpha
Helix 55	AG1	D	2	11	Right-handed alpha
Helix 56	AG2	D	22	34	Right-handed alpha
Helix 57	AG3	D	42	44	Right-handed 310
Helix 58	AG4	D	45	53	Right-handed alpha
Helix 59	AG5	D	64	82	Right-handed alpha
Helix 60	AG6	D	91	94	Right-handed 310
Helix 61	AG7	D	95	109	Right-handed alpha
Helix 62	AG8	D	118	126	Right-handed alpha
Helix 63	AG9	D	142	154	Right-handed alpha
Helix 64	AH1	D	179	185	Right-handed 310
Helix 65	AH2	D	187	199	Right-handed alpha
Helix 66	AH3	D	207	228	Right-handed alpha
Helix 67	AH4	D	233	248	Right-handed alpha
Helix 68	AH5	D	249	257	Right-handed alpha
Helix 69	AH6	F	2	11	Right-handed alpha
Helix 70	AH7	F	22	33	Right-handed alpha
Helix 71	AH8	F	42	53	Right-handed alpha
Helix 72	AH9	F	64	82	Right-handed alpha
Helix 73	AI1	F	91	94	Right-handed 310
Helix 74	AI2	F	95	109	Right-handed alpha
Helix 75	AI3	F	118	128	Right-handed alpha
Helix 76	AI4	F	141	154	Right-handed alpha
Helix 77	AI5	F	179	185	Right-handed 310
Helix 78	AI6	F	187	199	Right-handed alpha
Helix 79	AI7	F	207	228	Right-handed alpha
Helix 80	AI8	F	233	248	Right-handed alpha
Helix 81	AI9	F	249	257	Right-handed alpha

There are 6 sheets in PDB entry 5CGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	13	17	parallel
Strand 3	A	55	59	parallel
Strand 4	A	85	88	parallel
Strand 5	A	113	117	parallel
Strand 6	A	156	160	parallel
Strand 7	A	164	168	anti-parallel
Strand 8	A	171	175	anti-parallel
Strand 9	A	259	263	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	13	17	parallel
Strand 3	B	55	59	parallel
Strand 4	B	85	88	parallel
Strand 5	B	113	117	parallel
Strand 6	B	156	160	parallel
Strand 7	B	164	168	anti-parallel
Strand 8	B	171	175	anti-parallel
Strand 9	B	259	261	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	38	first strand
Strand 2	C	13	17	parallel
Strand 3	C	55	59	parallel
Strand 4	C	85	88	parallel
Strand 5	C	113	117	parallel
Strand 6	C	156	160	parallel
Strand 7	C	164	168	anti-parallel
Strand 8	C	171	175	anti-parallel
Strand 9	C	259	261	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	38	first strand
Strand 2	E	13	17	parallel
Strand 3	E	55	59	parallel
Strand 4	E	85	88	parallel
Strand 5	E	113	117	parallel
Strand 6	E	156	160	parallel
Strand 7	E	164	168	anti-parallel
Strand 8	E	171	175	anti-parallel
Strand 9	E	259	264	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	13	17	parallel
Strand 3	D	55	59	parallel
Strand 4	D	85	88	parallel
Strand 5	D	113	117	parallel
Strand 6	D	156	160	parallel
Strand 7	D	164	168	anti-parallel
Strand 8	D	171	175	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	38	first strand
Strand 2	F	13	17	parallel
Strand 3	F	55	59	parallel
Strand 4	F	85	88	parallel
Strand 5	F	113	117	parallel
Strand 6	F	156	160	parallel
Strand 7	F	164	168	anti-parallel
Strand 8	F	171	175	anti-parallel
Strand 9	F	259	260	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGE