Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CGL entry

There are 2 chains in PDB entry 5CGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13GLU 189
B
 LYS 12GLU 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5CGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
29 34Right-handed 310
Helix 3
AA3
A
38 51Right-handed alpha
Helix 4
AA4
A
79 87Right-handed alpha
Helix 5
AA5
A
92 107Right-handed alpha
Helix 6
AA6
A
112 130Right-handed alpha
Helix 7
AA7
A
135 138Right-handed 310
Helix 8
AA8
A
139 150Right-handed alpha
Helix 9
AA9
A
154 163Right-handed alpha
Helix 10
AB1
A
171 186Right-handed alpha
Helix 11
AB2
B
13 28Right-handed alpha
Helix 12
AB3
B
29 34Right-handed 310
Helix 13
AB4
B
38 51Right-handed alpha
Helix 14
AB5
B
78 87Right-handed alpha
Helix 15
AB6
B
92 107Right-handed alpha
Helix 16
AB7
B
112 130Right-handed alpha
Helix 17
AB8
B
135 138Right-handed 310
Helix 18
AB9
B
139 150Right-handed alpha
Helix 19
AC1
B
154 163Right-handed alpha
Helix 20
AC2
B
171 186Right-handed alpha
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There are 2 sheets in PDB entry 5CGL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
165 166anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
165 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il