Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CGM entry

There are 2 chains in PDB entry 5CGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	GLU 696
B	GLY -1	GLU 696

There are 54 helices in PDB entry 5CGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	18	Right-handed 310
Helix 2	AA2	A	123	136	Right-handed alpha
Helix 3	AA3	A	141	161	Right-handed alpha
Helix 4	AA4	A	168	180	Right-handed alpha
Helix 5	AA5	A	183	193	Right-handed alpha
Helix 6	AA6	A	193	203	Right-handed alpha
Helix 7	AA7	A	221	225	Right-handed 310
Helix 8	AA8	A	233	238	Right-handed 310
Helix 9	AA9	A	250	257	Right-handed alpha
Helix 10	AB1	A	257	264	Right-handed alpha
Helix 11	AB2	A	284	288	Right-handed 310
Helix 12	AB3	A	318	332	Right-handed alpha
Helix 13	AB4	A	348	354	Right-handed alpha
Helix 14	AB5	A	355	358	Right-handed 310
Helix 15	AB6	A	387	405	Right-handed alpha
Helix 16	AB7	A	415	418	Right-handed 310
Helix 17	AB8	A	419	434	Right-handed alpha
Helix 18	AB9	A	446	456	Right-handed alpha
Helix 19	AC1	A	464	468	Right-handed 310
Helix 20	AC2	A	470	484	Right-handed alpha
Helix 21	AC3	A	501	523	Right-handed alpha
Helix 22	AC4	A	531	535	Right-handed 310
Helix 23	AC5	A	559	566	Right-handed alpha
Helix 24	AC6	A	570	584	Right-handed alpha
Helix 25	AC7	A	585	589	Right-handed 310
Helix 26	AC8	A	636	641	Right-handed 310
Helix 27	AC9	A	685	693	Right-handed alpha
Helix 28	AD1	B	14	18	Right-handed 310
Helix 29	AD2	B	123	136	Right-handed alpha
Helix 30	AD3	B	146	161	Right-handed alpha
Helix 31	AD4	B	168	180	Right-handed alpha
Helix 32	AD5	B	183	189	Right-handed alpha
Helix 33	AD6	B	193	203	Right-handed alpha
Helix 34	AD7	B	221	225	Right-handed 310
Helix 35	AD8	B	233	238	Right-handed 310
Helix 36	AD9	B	250	257	Right-handed alpha
Helix 37	AE1	B	257	264	Right-handed alpha
Helix 38	AE2	B	284	288	Right-handed 310
Helix 39	AE3	B	318	332	Right-handed alpha
Helix 40	AE4	B	349	354	Right-handed alpha
Helix 41	AE5	B	355	358	Right-handed 310
Helix 42	AE6	B	387	405	Right-handed alpha
Helix 43	AE7	B	415	418	Right-handed 310
Helix 44	AE8	B	419	434	Right-handed alpha
Helix 45	AE9	B	446	456	Right-handed alpha
Helix 46	AF1	B	464	468	Right-handed 310
Helix 47	AF2	B	470	484	Right-handed alpha
Helix 48	AF3	B	501	523	Right-handed alpha
Helix 49	AF4	B	531	535	Right-handed 310
Helix 50	AF5	B	559	566	Right-handed alpha
Helix 51	AF6	B	570	584	Right-handed alpha
Helix 52	AF7	B	585	589	Right-handed 310
Helix 53	AF8	B	637	641	Right-handed 310
Helix 54	AF9	B	685	693	Right-handed alpha

There are 14 sheets in PDB entry 5CGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	0	2	first strand
Strand 2	A	6	11	anti-parallel
Strand 3	A	29	36	anti-parallel
Strand 4	A	101	106	anti-parallel
Strand 5	A	94	95	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	215	220	parallel
Strand 3	A	112	122	anti-parallel
Strand 4	A	43	51	anti-parallel
Strand 5	A	89	92	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	215	220	parallel
Strand 3	A	112	122	anti-parallel
Strand 4	A	207	211	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	461	first strand
Strand 2	A	438	442	parallel
Strand 3	A	409	413	parallel
Strand 4	A	335	340	parallel
Strand 5	A	268	271	parallel
Strand 6	A	227	231	parallel
Strand 7	A	525	529	parallel
Strand 8	A	491	493	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	380	381	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	595	first strand
Strand 2	A	603	609	anti-parallel
Strand 3	A	616	622	anti-parallel
Strand 4	A	676	680	anti-parallel
Strand 5	A	648	652	anti-parallel
Strand 6	A	658	661	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	598	first strand
Strand 2	A	629	634	anti-parallel
Strand 3	A	664	669	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	2	first strand
Strand 2	B	6	11	anti-parallel
Strand 3	B	29	36	anti-parallel
Strand 4	B	101	106	anti-parallel
Strand 5	B	94	95	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	207	220	parallel
Strand 3	B	112	122	anti-parallel
Strand 4	B	43	51	anti-parallel
Strand 5	B	89	92	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	461	first strand
Strand 2	B	438	442	parallel
Strand 3	B	409	413	parallel
Strand 4	B	335	340	parallel
Strand 5	B	268	271	parallel
Strand 6	B	227	231	parallel
Strand 7	B	525	529	parallel
Strand 8	B	491	493	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	380	381	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	371	first strand
Strand 2	B	374	376	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	595	first strand
Strand 2	B	603	609	anti-parallel
Strand 3	B	616	622	anti-parallel
Strand 4	B	676	680	anti-parallel
Strand 5	B	648	652	anti-parallel
Strand 6	B	658	661	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	598	first strand
Strand 2	B	629	634	anti-parallel
Strand 3	B	664	669	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGM