Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CGW entry

There is 1 chain in PDB entry 5CGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5CGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 23Right-handed alpha
Helix 2
AA2
A
65 80Right-handed alpha
Helix 3
AA3
A
88 97Right-handed 310
Helix 4
AA4
A
99 104Right-handed 310
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
127 138Right-handed alpha
Helix 7
AA7
A
151 165Right-handed alpha
Helix 8
AA8
A
169 177Right-handed alpha
Helix 9
AA9
A
177 183Right-handed alpha
Helix 10
AB1
A
192 199Right-handed 310
Helix 11
AB2
A
217 223Right-handed alpha
Helix 12
AB3
A
227 240Right-handed alpha
Helix 13
AB4
A
244 255Right-handed alpha
Helix 14
AB5
A
278 286Right-handed alpha
Helix 15
AB6
A
287 292Right-handed alpha
Helix 16
AB7
A
344 360Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5CGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
333 339anti-parallel
Strand 5
A
321 328anti-parallel
Strand 6
A
310 318anti-parallel
Strand 7
A
271 274anti-parallel
Strand 8
A
264 266anti-parallel
Strand 9
A
256 261anti-parallel
Strand 10
A
298 305anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
225 226anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
295 296anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
209 210anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il