Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CGY entry

There are 4 chains in PDB entry 5CGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	LYS 228
L	ALA 1	PRO 213
C	GLN 1	LYS 228
D	SER 2	PRO 213

There are 21 helices in PDB entry 5CGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	62	65	Right-handed 310
Helix 3	AA3	H	74	76	Right-handed 310
Helix 4	AA4	H	87	91	Right-handed 310
Helix 5	AA5	H	100	104	Right-handed 310
Helix 6	AA6	H	170	172	Right-handed 310
Helix 7	AA7	H	201	203	Right-handed 310
Helix 8	AA8	H	215	218	Right-handed 310
Helix 9	AA9	L	80	84	Right-handed 310
Helix 10	AB1	L	126	132	Right-handed alpha
Helix 11	AB2	L	186	192	Right-handed alpha
Helix 12	AB3	C	28	32	Right-handed 310
Helix 13	AB4	C	74	76	Right-handed 310
Helix 14	AB5	C	87	91	Right-handed 310
Helix 15	AB6	C	100	104	Right-handed 310
Helix 16	AB7	C	170	172	Right-handed 310
Helix 17	AB8	C	201	203	Right-handed 310
Helix 18	AB9	C	215	218	Right-handed 310
Helix 19	AC1	D	80	84	Right-handed 310
Helix 20	AC2	D	126	132	Right-handed alpha
Helix 21	AC3	D	188	193	Right-handed alpha

There are 24 sheets in PDB entry 5CGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	121	125	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	121	125	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	116	117	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	177	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	209	214	anti-parallel
Strand 3	H	219	224	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	99	102	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	23	first strand
Strand 2	L	71	77	anti-parallel
Strand 3	L	63	68	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	164	166	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	170	171	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	202	anti-parallel
Strand 4	L	205	211	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	116	117	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	149	159	anti-parallel
Strand 3	C	190	199	anti-parallel
Strand 4	C	177	179	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	149	159	anti-parallel
Strand 3	C	190	199	anti-parallel
Strand 4	C	183	184	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	168	first strand
Strand 2	C	209	214	anti-parallel
Strand 3	C	219	224	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	110	parallel
Strand 3	D	85	93	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	43	49	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	110	parallel
Strand 3	D	85	93	anti-parallel
Strand 4	D	99	102	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	23	first strand
Strand 2	D	71	77	anti-parallel
Strand 3	D	63	68	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	135	144	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	164	166	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	135	144	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	170	171	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	196	202	anti-parallel
Strand 4	D	205	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGY