Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CGZ entry

There are 2 chains in PDB entry 5CGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5ALA 244
B
 MET 5ALA 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5CGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
49 55Right-handed alpha
Helix 3
AA3
A
59 79Right-handed alpha
Helix 4
AA4
A
95 110Right-handed alpha
Helix 5
AA5
A
125 143Right-handed alpha
Helix 6
AA6
A
182 191Right-handed alpha
Helix 7
AA7
A
196 217Right-handed alpha
Helix 8
AA8
B
16 32Right-handed alpha
Helix 9
AA9
B
49 54Right-handed alpha
Helix 10
AB1
B
59 79Right-handed alpha
Helix 11
AB2
B
95 110Right-handed alpha
Helix 12
AB3
B
125 141Right-handed alpha
Helix 13
AB4
B
182 191Right-handed alpha
Helix 14
AB5
B
196 217Right-handed alpha
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There are 2 sheets in PDB entry 5CGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
35 40parallel
Strand 3
A
7 12parallel
Strand 4
A
114 116parallel
Strand 5
A
158 161parallel
Strand 6
A
229 234anti-parallel
Strand 7
A
175 178anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 84first strand
Strand 2
B
35 40parallel
Strand 3
B
7 12parallel
Strand 4
B
114 116parallel
Strand 5
B
158 161parallel
Strand 6
B
229 234anti-parallel
Strand 7
B
175 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il