Analysis of interatomic Contacts of Structural Units in PDB entry:
5CH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CH8 entry

There is 1 chain in PDB entry 5CH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1LYS 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5CH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 20Right-handed alpha
Helix 2
AA2
A
22 27Right-handed alpha
Helix 3
AA3
A
41 47Right-handed alpha
Helix 4
AA4
A
85 93Right-handed alpha
Helix 5
AA5
A
110 134Right-handed alpha
Helix 6
AA6
A
145 160Right-handed alpha
Helix 7
AA7
A
179 189Right-handed alpha
Helix 8
AA8
A
200 204Right-handed 310
Helix 9
AA9
A
206 209Right-handed 310
Helix 10
AB1
A
229 231Right-handed 310
Helix 11
AB2
A
243 249Right-handed 310
Helix 12
AB3
A
252 260Right-handed 310
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There are 3 sheets in PDB entry 5CH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
75 81anti-parallel
Strand 4
A
138 144parallel
Strand 5
A
167 171parallel
Strand 6
A
191 196parallel
Strand 7
A
217 220parallel
Strand 8
A
233 236anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
108 109anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
211 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il