Analysis of interatomic Contacts of Structural Units in PDB entry:
5CHA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CHA entry

There are 6 chains in PDB entry 5CHA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	VAL 9
B	ILE 16	TYR 146
C	ALA 149	ASN 245
E	CYS 1	VAL 9
F	ILE 16	TYR 146
G	ALA 149	ASN 245

There are 4 helices in PDB entry 5CHA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	H1A	C	167	176	Right-handed alpha
Helix 2	H2A	C	230	245	Right-handed alpha
Helix 3	H1B	G	167	176	Right-handed alpha
Helix 4	H2B	G	230	245	Right-handed alpha

There are 4 sheets in PDB entry 5CHA. Click on sheet of interest to get list of strands forming it: AA, BA, AB, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	35	first strand
Strand 2	B	42	49	anti-parallel
Strand 3	B	50	56	anti-parallel
Strand 4	B	101	110	anti-parallel
Strand 5	B	81	92	anti-parallel
Strand 6	B	63	69	anti-parallel
Strand 7	B	28	35	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	141	first strand
Strand 2	C	155	162	anti-parallel
Strand 3	C	179	186	anti-parallel
Strand 4	C	223	229	anti-parallel
Strand 5	C	212	218	anti-parallel
Strand 6	C	193	201	anti-parallel
Strand 7	B	133	141	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	35	first strand
Strand 2	F	42	49	anti-parallel
Strand 3	F	50	56	anti-parallel
Strand 4	F	101	110	anti-parallel
Strand 5	F	81	92	anti-parallel
Strand 6	F	63	69	anti-parallel
Strand 7	F	28	35	anti-parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	141	first strand
Strand 2	G	155	162	anti-parallel
Strand 3	G	179	186	anti-parallel
Strand 4	G	223	229	anti-parallel
Strand 5	G	212	218	anti-parallel
Strand 6	G	193	201	anti-parallel
Strand 7	F	133	141	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CHA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CHA