Analysis of interatomic Contacts of Structural Units in PDB entry:
5CHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CHM entry

There is 1 chain in PDB entry 5CHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7GLU 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5CHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 23Right-handed alpha
Helix 2
AA2
A
65 80Right-handed alpha
Helix 3
AA3
A
88 97Right-handed 310
Helix 4
AA4
A
99 104Right-handed 310
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
127 137Right-handed alpha
Helix 7
AA7
A
151 166Right-handed alpha
Helix 8
AA8
A
169 177Right-handed alpha
Helix 9
AA9
A
177 182Right-handed alpha
Helix 10
AB1
A
192 199Right-handed 310
Helix 11
AB2
A
217 223Right-handed alpha
Helix 12
AB3
A
227 240Right-handed alpha
Helix 13
AB4
A
244 255Right-handed alpha
Helix 14
AB5
A
278 286Right-handed alpha
Helix 15
AB6
A
287 292Right-handed alpha
Helix 16
AB7
A
329 332Right-handed 310
Helix 17
AB8
A
344 361Right-handed alpha
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There are 4 sheets in PDB entry 5CHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 44first strand
Strand 2
A
27 34anti-parallel
Strand 3
A
333 339anti-parallel
Strand 4
A
322 328anti-parallel
Strand 5
A
310 317anti-parallel
Strand 6
A
271 274anti-parallel
Strand 7
A
264 266anti-parallel
Strand 8
A
256 261anti-parallel
Strand 9
A
298 305anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
225 226anti-parallel
Strand 3
A
187 188anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
295 296anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
209 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il