Analysis of interatomic Contacts of Structural Units in PDB entry:
5CHO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CHO entry

There are 8 chains in PDB entry 5CHO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 30	PRO 194
B	LEU 31	ALA 193
C	LEU 31	VAL 195
D	LEU 31	PRO 194
E	ASP 33	ALA 193
F	ASP 33	ARG 192
G	ASP 33	ARG 192
H	SER 34	ALA 193

There are 40 helices in PDB entry 5CHO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	42	Right-handed alpha
Helix 2	AA2	A	84	94	Right-handed alpha
Helix 3	AA3	A	102	104	Right-handed 310
Helix 4	AA4	A	105	112	Right-handed alpha
Helix 5	AA5	A	120	126	Right-handed 310
Helix 6	AA6	B	33	42	Right-handed alpha
Helix 7	AA7	B	84	94	Right-handed alpha
Helix 8	AA8	B	102	104	Right-handed 310
Helix 9	AA9	B	105	112	Right-handed alpha
Helix 10	AB1	B	120	126	Right-handed 310
Helix 11	AB2	C	33	42	Right-handed alpha
Helix 12	AB3	C	84	94	Right-handed alpha
Helix 13	AB4	C	102	104	Right-handed 310
Helix 14	AB5	C	105	112	Right-handed alpha
Helix 15	AB6	C	120	126	Right-handed 310
Helix 16	AB7	D	33	42	Right-handed alpha
Helix 17	AB8	D	84	94	Right-handed alpha
Helix 18	AB9	D	102	104	Right-handed 310
Helix 19	AC1	D	105	112	Right-handed alpha
Helix 20	AC2	D	120	126	Right-handed 310
Helix 21	AC3	E	34	42	Right-handed alpha
Helix 22	AC4	E	84	94	Right-handed alpha
Helix 23	AC5	E	102	104	Right-handed 310
Helix 24	AC6	E	105	112	Right-handed alpha
Helix 25	AC7	E	120	126	Right-handed 310
Helix 26	AC8	F	34	42	Right-handed alpha
Helix 27	AC9	F	84	94	Right-handed alpha
Helix 28	AD1	F	102	104	Right-handed 310
Helix 29	AD2	F	105	112	Right-handed alpha
Helix 30	AD3	F	120	126	Right-handed 310
Helix 31	AD4	G	34	42	Right-handed alpha
Helix 32	AD5	G	84	94	Right-handed alpha
Helix 33	AD6	G	102	104	Right-handed 310
Helix 34	AD7	G	105	112	Right-handed alpha
Helix 35	AD8	G	120	126	Right-handed 310
Helix 36	AD9	H	35	42	Right-handed alpha
Helix 37	AE1	H	84	94	Right-handed alpha
Helix 38	AE2	H	102	104	Right-handed 310
Helix 39	AE3	H	105	112	Right-handed alpha
Helix 40	AE4	H	120	126	Right-handed 310

There are 24 sheets in PDB entry 5CHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	178	182	anti-parallel
Strand 3	A	185	189	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	49	53	anti-parallel
Strand 3	A	95	100	anti-parallel
Strand 4	A	145	157	anti-parallel
Strand 5	A	160	172	anti-parallel
Strand 6	A	75	81	anti-parallel
Strand 7	A	67	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	138	140	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	49	53	anti-parallel
Strand 3	B	95	100	anti-parallel
Strand 4	B	145	157	anti-parallel
Strand 5	B	160	172	anti-parallel
Strand 6	B	75	81	anti-parallel
Strand 7	B	67	70	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	138	140	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	182	first strand
Strand 2	B	185	189	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	63	first strand
Strand 2	C	49	53	anti-parallel
Strand 3	C	95	100	anti-parallel
Strand 4	C	145	157	anti-parallel
Strand 5	C	160	172	anti-parallel
Strand 6	C	75	81	anti-parallel
Strand 7	C	67	70	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	138	140	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	182	first strand
Strand 2	C	185	189	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	63	first strand
Strand 2	D	49	53	anti-parallel
Strand 3	D	95	100	anti-parallel
Strand 4	D	145	157	anti-parallel
Strand 5	D	160	172	anti-parallel
Strand 6	D	75	81	anti-parallel
Strand 7	D	67	70	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	138	140	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	182	first strand
Strand 2	D	185	189	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	47	first strand
Strand 2	E	178	182	anti-parallel
Strand 3	E	185	189	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	63	first strand
Strand 2	E	49	53	anti-parallel
Strand 3	E	95	100	anti-parallel
Strand 4	E	145	157	anti-parallel
Strand 5	E	160	172	anti-parallel
Strand 6	E	75	81	anti-parallel
Strand 7	E	67	70	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	131	first strand
Strand 2	E	138	140	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	63	first strand
Strand 2	F	49	53	anti-parallel
Strand 3	F	95	100	anti-parallel
Strand 4	F	145	157	anti-parallel
Strand 5	F	160	172	anti-parallel
Strand 6	F	75	81	anti-parallel
Strand 7	F	67	70	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	131	first strand
Strand 2	F	138	140	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	182	first strand
Strand 2	F	185	189	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	178	182	anti-parallel
Strand 3	G	185	189	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	63	first strand
Strand 2	G	49	53	anti-parallel
Strand 3	G	95	100	anti-parallel
Strand 4	G	145	157	anti-parallel
Strand 5	G	160	172	anti-parallel
Strand 6	G	75	81	anti-parallel
Strand 7	G	67	70	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	131	first strand
Strand 2	G	138	140	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	63	first strand
Strand 2	H	49	53	anti-parallel
Strand 3	H	95	100	anti-parallel
Strand 4	H	145	157	anti-parallel
Strand 5	H	160	172	anti-parallel
Strand 6	H	75	81	anti-parallel
Strand 7	H	67	70	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	131	first strand
Strand 2	H	138	140	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	178	182	first strand
Strand 2	H	185	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CHO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CHO