Analysis of interatomic Contacts of Structural Units in PDB entry:
5CI6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CI6 entry

There are 2 chains in PDB entry 5CI6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 32TYR 393
B
 GLY 32GLN 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 5CI6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 117Right-handed alpha
Helix 2
AA2
A
133 137Right-handed 310
Helix 3
AA3
A
151 157Right-handed alpha
Helix 4
AA4
A
162 183Right-handed alpha
Helix 5
AA5
A
191 193Right-handed 310
Helix 6
AA6
A
231 236Right-handed alpha
Helix 7
AA7
A
243 260Right-handed alpha
Helix 8
AA8
A
268 281Right-handed alpha
Helix 9
AA9
A
292 302Right-handed alpha
Helix 10
AB1
A
309 314Right-handed alpha
Helix 11
AB2
A
318 329Right-handed alpha
Helix 12
AB3
A
332 336Right-handed 310
Helix 13
AB4
A
338 344Right-handed alpha
Helix 14
AB5
A
345 349Right-handed 310
Helix 15
AB6
A
353 357Right-handed 310
Helix 16
AB7
A
377 390Right-handed alpha
Helix 17
AB8
B
100 117Right-handed alpha
Helix 18
AB9
B
151 157Right-handed alpha
Helix 19
AC1
B
162 183Right-handed alpha
Helix 20
AC2
B
191 193Right-handed 310
Helix 21
AC3
B
231 236Right-handed alpha
Helix 22
AC4
B
243 260Right-handed alpha
Helix 23
AC5
B
268 281Right-handed alpha
Helix 24
AC6
B
292 302Right-handed alpha
Helix 25
AC7
B
309 314Right-handed alpha
Helix 26
AC8
B
318 329Right-handed alpha
Helix 27
AC9
B
338 344Right-handed alpha
Helix 28
AD1
B
345 349Right-handed 310
Helix 29
AD2
B
353 357Right-handed 310
Helix 30
AD3
B
374 390Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5CI6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
56 59anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
125 128anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
195 197anti-parallel
Strand 3
A
203 205anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
46 49anti-parallel
Strand 3
B
56 59anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 70first strand
Strand 2
B
77 81anti-parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
140 145anti-parallel
Strand 5
B
125 128anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
195 197anti-parallel
Strand 3
B
203 205anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il