Analysis of interatomic Contacts of Structural Units in PDB entry:
5CIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CIM entry

There are 2 chains in PDB entry 5CIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	GLU 696
B	SER 0	ASN 680

There are 52 helices in PDB entry 5CIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	18	Right-handed 310
Helix 2	AA2	A	123	137	Right-handed alpha
Helix 3	AA3	A	145	161	Right-handed alpha
Helix 4	AA4	A	168	180	Right-handed alpha
Helix 5	AA5	A	183	193	Right-handed alpha
Helix 6	AA6	A	193	203	Right-handed alpha
Helix 7	AA7	A	221	225	Right-handed 310
Helix 8	AA8	A	233	239	Right-handed 310
Helix 9	AA9	A	250	264	Right-handed alpha
Helix 10	AB1	A	284	288	Right-handed 310
Helix 11	AB2	A	318	332	Right-handed alpha
Helix 12	AB3	A	348	354	Right-handed alpha
Helix 13	AB4	A	387	404	Right-handed alpha
Helix 14	AB5	A	415	418	Right-handed 310
Helix 15	AB6	A	419	434	Right-handed alpha
Helix 16	AB7	A	446	456	Right-handed alpha
Helix 17	AB8	A	464	467	Right-handed 310
Helix 18	AB9	A	470	484	Right-handed alpha
Helix 19	AC1	A	485	487	Right-handed 310
Helix 20	AC2	A	501	523	Right-handed alpha
Helix 21	AC3	A	531	535	Right-handed 310
Helix 22	AC4	A	559	567	Right-handed alpha
Helix 23	AC5	A	570	584	Right-handed alpha
Helix 24	AC6	A	585	588	Right-handed 310
Helix 25	AC7	A	637	641	Right-handed 310
Helix 26	AC8	A	685	694	Right-handed alpha
Helix 27	AC9	B	14	18	Right-handed 310
Helix 28	AD1	B	123	132	Right-handed alpha
Helix 29	AD2	B	150	162	Right-handed alpha
Helix 30	AD3	B	168	180	Right-handed alpha
Helix 31	AD4	B	188	193	Right-handed alpha
Helix 32	AD5	B	193	203	Right-handed alpha
Helix 33	AD6	B	221	225	Right-handed 310
Helix 34	AD7	B	233	239	Right-handed 310
Helix 35	AD8	B	250	264	Right-handed alpha
Helix 36	AD9	B	284	288	Right-handed 310
Helix 37	AE1	B	318	332	Right-handed alpha
Helix 38	AE2	B	348	354	Right-handed alpha
Helix 39	AE3	B	355	358	Right-handed 310
Helix 40	AE4	B	387	404	Right-handed alpha
Helix 41	AE5	B	415	418	Right-handed 310
Helix 42	AE6	B	419	434	Right-handed alpha
Helix 43	AE7	B	446	456	Right-handed alpha
Helix 44	AE8	B	464	468	Right-handed 310
Helix 45	AE9	B	470	484	Right-handed alpha
Helix 46	AF1	B	485	487	Right-handed 310
Helix 47	AF2	B	501	523	Right-handed alpha
Helix 48	AF3	B	559	567	Right-handed alpha
Helix 49	AF4	B	570	584	Right-handed alpha
Helix 50	AF5	B	585	588	Right-handed 310
Helix 51	AF6	B	636	641	Right-handed 310
Helix 52	AF7	B	685	694	Right-handed alpha

There are 12 sheets in PDB entry 5CIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1	2	first strand
Strand 2	A	6	11	anti-parallel
Strand 3	A	29	36	anti-parallel
Strand 4	A	101	106	anti-parallel
Strand 5	A	89	95	anti-parallel
Strand 6	A	43	51	anti-parallel
Strand 7	A	112	122	anti-parallel
Strand 8	A	207	220	anti-parallel
Strand 9	A	21	24	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	231	first strand
Strand 2	A	268	271	parallel
Strand 3	A	335	340	parallel
Strand 4	A	409	413	parallel
Strand 5	A	438	442	parallel
Strand 6	A	460	462	parallel
Strand 7	A	490	493	parallel
Strand 8	A	525	529	parallel
Strand 9	A	227	231	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	380	381	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	595	first strand
Strand 2	A	603	609	anti-parallel
Strand 3	A	616	622	anti-parallel
Strand 4	A	676	681	anti-parallel
Strand 5	A	648	652	anti-parallel
Strand 6	A	658	661	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	598	first strand
Strand 2	A	629	634	anti-parallel
Strand 3	A	664	669	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	2	first strand
Strand 2	B	6	11	anti-parallel
Strand 3	B	29	36	anti-parallel
Strand 4	B	101	106	anti-parallel
Strand 5	B	89	95	anti-parallel
Strand 6	B	43	53	anti-parallel
Strand 7	B	112	122	anti-parallel
Strand 8	B	215	220	anti-parallel
Strand 9	B	21	24	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	2	first strand
Strand 2	B	6	11	anti-parallel
Strand 3	B	29	36	anti-parallel
Strand 4	B	101	106	anti-parallel
Strand 5	B	89	95	anti-parallel
Strand 6	B	43	53	anti-parallel
Strand 7	B	112	122	anti-parallel
Strand 8	B	207	211	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	231	first strand
Strand 2	B	268	271	parallel
Strand 3	B	335	340	parallel
Strand 4	B	409	413	parallel
Strand 5	B	438	442	parallel
Strand 6	B	460	462	parallel
Strand 7	B	490	493	parallel
Strand 8	B	525	529	parallel
Strand 9	B	227	231	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	380	381	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	374	375	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	595	first strand
Strand 2	B	603	609	anti-parallel
Strand 3	B	616	622	anti-parallel
Strand 4	B	676	681	anti-parallel
Strand 5	B	648	652	anti-parallel
Strand 6	B	658	661	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	634	first strand
Strand 2	B	664	669	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CIM