Analysis of interatomic Contacts of Structural Units in PDB entry:
5CIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CIW entry

There are 2 chains in PDB entry 5CIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9THR 207
B
 VAL 9THR 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5CIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 28Right-handed alpha
Helix 2
AA2
A
30 36Right-handed alpha
Helix 3
AA3
A
41 43Right-handed 310
Helix 4
AA4
A
68 73Right-handed 310
Helix 5
AA5
A
76 81Right-handed alpha
Helix 6
AA6
A
94 100Right-handed alpha
Helix 7
AA7
A
100 110Right-handed alpha
Helix 8
AA8
A
132 136Right-handed 310
Helix 9
AA9
A
137 142Right-handed alpha
Helix 10
AB1
A
157 170Right-handed alpha
Helix 11
AB2
A
190 206Right-handed alpha
Helix 12
AB3
B
22 28Right-handed alpha
Helix 13
AB4
B
30 36Right-handed alpha
Helix 14
AB5
B
41 43Right-handed 310
Helix 15
AB6
B
68 72Right-handed 310
Helix 16
AB7
B
94 100Right-handed alpha
Helix 17
AB8
B
100 112Right-handed alpha
Helix 18
AB9
B
132 136Right-handed 310
Helix 19
AC1
B
137 142Right-handed alpha
Helix 20
AC2
B
157 170Right-handed alpha
Helix 21
AC3
B
190 205Right-handed alpha
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There are 4 sheets in PDB entry 5CIW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
45 54anti-parallel
Strand 3
A
57 66anti-parallel
Strand 4
A
10 16parallel
Strand 5
A
85 91parallel
Strand 6
A
117 122parallel
Strand 7
A
145 148parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
45 54anti-parallel
Strand 3
A
176 178anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
45 54anti-parallel
Strand 3
B
57 66anti-parallel
Strand 4
B
10 17parallel
Strand 5
B
85 91parallel
Strand 6
B
117 122parallel
Strand 7
B
145 148parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
45 54anti-parallel
Strand 3
B
176 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il