Analysis of interatomic Contacts of Structural Units in PDB entry:
5CIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CIY entry

There are 4 chains in PDB entry 5CIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 327
C
 C 402 C 413
D
 G 422 G 426
D
 G 428 G 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5CIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
42 54Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
65 69Right-handed 310
Helix 5
AA5
A
91 98Right-handed 310
Helix 6
AA6
A
99 112Right-handed alpha
Helix 7
AA7
A
123 129Right-handed 310
Helix 8
AA8
A
130 143Right-handed alpha
Helix 9
AA9
A
155 157Right-handed 310
Helix 10
AB1
A
173 176Right-handed 310
Helix 11
AB2
A
191 195Right-handed 310
Helix 12
AB3
A
198 204Right-handed 310
Helix 13
AB4
A
275 283Right-handed alpha
Helix 14
AB5
A
294 305Right-handed alpha
Helix 15
AB6
A
307 324Right-handed alpha
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There are 2 sheets in PDB entry 5CIY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
13 17parallel
Strand 3
A
74 78parallel
Strand 4
A
115 121parallel
Strand 5
A
164 171anti-parallel
Strand 6
A
148 153anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
270 272anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
240 243parallel
Strand 5
A
228 231anti-parallel
Strand 6
A
213 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il