Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CJ4 entry

There are 61 chains in PDB entry 5CJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ARG 3
A
 ILE 5GLU 25
A
 THR 27GLU 62
A
 GLY 64GLY 64
A
 TYR 66ARG 71
A
 ALA 73SER 89
A
 GLU 91GLU 98
A
 ASN 100LEU 101
A
 ASP 103GLU 114
A
 VAL 116ALA 139
A
 ASN 141ILE 1568
A
 ALA 1570ARG 1574
A
 LEU 1576GLU 1578
A
 ASP 1580ALA 1586
A
 ARG 1588VAL 1614
B
 GLY 1ARG 3
B
 ILE 5GLU 25
B
 THR 27GLU 62
B
 GLY 64GLY 64
B
 TYR 66ARG 71
B
 ALA 73SER 89
B
 GLU 91GLU 98
B
 ASN 100LEU 101
B
 ASP 103GLU 114
B
 VAL 116ALA 139
B
 ASN 141ILE 1568
B
 ALA 1570ARG 1574
B
 LEU 1576GLU 1578
B
 ASP 1580ALA 1586
B
 ARG 1588ARG 1608
C
 GLY 1ARG 3
C
 ILE 5GLU 25
C
 THR 27GLU 62
C
 GLY 64GLY 64
C
 TYR 66ARG 71
C
 ALA 73SER 89
C
 GLU 91GLU 98
C
 ASN 100LEU 101
C
 ASP 103GLU 114
C
 VAL 116ALA 139
C
 ASN 141ILE 1568
C
 ALA 1570ARG 1574
C
 LEU 1576GLU 1578
C
 ASP 1580ALA 1586
C
 ARG 1588VAL 1614
C
 MET 1618GLU 1619
D
 GLY 1ARG 3
D
 ILE 5GLU 25
D
 THR 27GLU 62
D
 GLY 64GLY 64
D
 TYR 66ARG 71
D
 ALA 73SER 89
D
 GLU 91GLU 98
D
 ASN 100LEU 101
D
 ASP 103GLU 114
D
 VAL 116ALA 139
D
 ASN 141ILE 1568
D
 ALA 1570ARG 1574
D
 LEU 1576GLU 1578
D
 ASP 1580ALA 1586
D
 ARG 1588LEU 1612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5CJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
48 59Right-handed alpha
Helix 3
AA3
A
62 75Right-handed alpha
Helix 4
AA4
A
118 1615Right-handed alpha
Helix 5
AA5
B
27 31Right-handed 310
Helix 6
AA6
B
48 59Right-handed alpha
Helix 7
AA7
B
62 75Right-handed alpha
Helix 8
AA8
B
118 1608Right-handed alpha
Helix 9
AA9
C
27 29Right-handed 310
Helix 10
AB1
C
49 59Right-handed alpha
Helix 11
AB2
C
62 75Right-handed alpha
Helix 12
AB3
C
118 1619Right-handed alpha
Helix 13
AB4
D
27 29Right-handed 310
Helix 14
AB5
D
49 59Right-handed alpha
Helix 15
AB6
D
62 75Right-handed alpha
Helix 16
AB7
D
118 1611Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5CJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
32 37anti-parallel
Strand 4
A
42 47anti-parallel
Strand 5
A
114 115anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
94 101anti-parallel
Strand 3
A
104 112anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
32 37anti-parallel
Strand 4
B
42 47anti-parallel
Strand 5
B
114 115anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
94 101anti-parallel
Strand 3
B
104 112anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 9first strand
Strand 2
C
17 24anti-parallel
Strand 3
C
31 37anti-parallel
Strand 4
C
42 48anti-parallel
Strand 5
C
114 115anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 89first strand
Strand 2
C
94 100anti-parallel
Strand 3
C
105 112anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 9first strand
Strand 2
D
17 24anti-parallel
Strand 3
D
31 37anti-parallel
Strand 4
D
42 48anti-parallel
Strand 5
D
114 115anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 89first strand
Strand 2
D
94 101anti-parallel
Strand 3
D
104 112anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il