Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CJ5 entry

There are 2 chains in PDB entry 5CJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	GLU 696
B	SER 0	GLU 696

There are 49 helices in PDB entry 5CJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	18	Right-handed 310
Helix 2	AA2	A	124	130	Right-handed alpha
Helix 3	AA3	A	130	138	Right-handed alpha
Helix 4	AA4	A	141	160	Right-handed alpha
Helix 5	AA5	A	164	167	Right-handed 310
Helix 6	AA6	A	168	180	Right-handed alpha
Helix 7	AA7	A	183	193	Right-handed alpha
Helix 8	AA8	A	193	200	Right-handed alpha
Helix 9	AA9	A	234	238	Right-handed 310
Helix 10	AB1	A	250	255	Right-handed alpha
Helix 11	AB2	A	257	265	Right-handed alpha
Helix 12	AB3	A	318	331	Right-handed alpha
Helix 13	AB4	A	387	407	Right-handed alpha
Helix 14	AB5	A	419	434	Right-handed alpha
Helix 15	AB6	A	446	451	Right-handed alpha
Helix 16	AB7	A	451	457	Right-handed alpha
Helix 17	AB8	A	475	475	Right-handed alpha
Helix 18	AB9	A	478	484	Right-handed alpha
Helix 19	AC1	A	501	508	Right-handed alpha
Helix 20	AC2	A	508	522	Right-handed alpha
Helix 21	AC3	A	559	566	Right-handed alpha
Helix 22	AC4	A	570	584	Right-handed alpha
Helix 23	AC5	A	585	589	Right-handed 310
Helix 24	AC6	A	685	690	Right-handed alpha
Helix 25	AC7	B	123	137	Right-handed alpha
Helix 26	AC8	B	141	146	Right-handed alpha
Helix 27	AC9	B	152	162	Right-handed alpha
Helix 28	AD1	B	164	167	Right-handed 310
Helix 29	AD2	B	168	180	Right-handed alpha
Helix 30	AD3	B	183	193	Right-handed alpha
Helix 31	AD4	B	193	203	Right-handed alpha
Helix 32	AD5	B	221	225	Right-handed 310
Helix 33	AD6	B	234	239	Right-handed 310
Helix 34	AD7	B	250	256	Right-handed alpha
Helix 35	AD8	B	257	265	Right-handed alpha
Helix 36	AD9	B	319	331	Right-handed alpha
Helix 37	AE1	B	387	407	Right-handed alpha
Helix 38	AE2	B	415	418	Right-handed 310
Helix 39	AE3	B	419	434	Right-handed alpha
Helix 40	AE4	B	446	457	Right-handed alpha
Helix 41	AE5	B	464	468	Right-handed 310
Helix 42	AE6	B	472	484	Right-handed alpha
Helix 43	AE7	B	501	508	Right-handed alpha
Helix 44	AE8	B	509	521	Right-handed alpha
Helix 45	AE9	B	559	566	Right-handed alpha
Helix 46	AF1	B	575	584	Right-handed alpha
Helix 47	AF2	B	585	588	Right-handed 310
Helix 48	AF3	B	636	641	Right-handed alpha
Helix 49	AF4	B	685	693	Right-handed alpha

There are 14 sheets in PDB entry 5CJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	29	36	anti-parallel
Strand 3	A	101	106	anti-parallel
Strand 4	A	94	95	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	207	220	parallel
Strand 3	A	112	122	anti-parallel
Strand 4	A	43	51	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	231	first strand
Strand 2	A	268	271	parallel
Strand 3	A	336	340	parallel
Strand 4	A	409	412	parallel
Strand 5	A	438	441	parallel
Strand 6	A	460	462	parallel
Strand 7	A	490	493	parallel
Strand 8	A	525	527	parallel
Strand 9	A	227	231	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	246	247	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	380	381	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	365	366	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	374	375	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	595	first strand
Strand 2	A	606	608	anti-parallel
Strand 3	A	616	620	anti-parallel
Strand 4	A	677	681	anti-parallel
Strand 5	A	648	652	anti-parallel
Strand 6	A	659	661	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	29	36	anti-parallel
Strand 3	B	101	106	anti-parallel
Strand 4	B	89	95	anti-parallel
Strand 5	B	43	53	anti-parallel
Strand 6	B	112	122	anti-parallel
Strand 7	B	215	220	anti-parallel
Strand 8	B	21	24	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	29	36	anti-parallel
Strand 3	B	101	106	anti-parallel
Strand 4	B	89	95	anti-parallel
Strand 5	B	43	53	anti-parallel
Strand 6	B	112	122	anti-parallel
Strand 7	B	207	211	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	231	first strand
Strand 2	B	268	271	parallel
Strand 3	B	335	340	parallel
Strand 4	B	409	413	parallel
Strand 5	B	438	442	parallel
Strand 6	B	460	462	parallel
Strand 7	B	490	493	parallel
Strand 8	B	525	529	parallel
Strand 9	B	227	231	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	365	366	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	595	first strand
Strand 2	B	603	608	anti-parallel
Strand 3	B	616	622	anti-parallel
Strand 4	B	676	681	anti-parallel
Strand 5	B	648	652	anti-parallel
Strand 6	B	658	661	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	634	first strand
Strand 2	B	664	667	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJ5