Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CJB entry

There are 22 chains in PDB entry 5CJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 35ILE 219
B
 GLY 1PRO 2
B
 GLY 4PRO 5
B
 GLY 7PRO 8
B
 GLY 10PRO 11
B
 GLY 13PHE 17
B
 GLY 19PRO 20
B
 GLY 22PRO 23
C
 GLY 1PRO 2
C
 GLY 4PRO 5
C
 GLY 7PRO 8
C
 GLY 10PRO 11
C
 GLY 13PHE 17
C
 GLY 19PRO 20
C
 GLY 22GLY 22
D
 GLY 1PRO 2
D
 GLY 4PRO 5
D
 GLY 7PRO 8
D
 GLY 10PRO 11
D
 GLY 13PHE 17
D
 GLY 19PRO 20
D
 GLY 22PRO 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 5CJB. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 193Right-handed 310
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There are 4 sheets in PDB entry 5CJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
53 69anti-parallel
Strand 3
A
100 107anti-parallel
Strand 4
A
123 127anti-parallel
Strand 5
A
46 47parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
53 69anti-parallel
Strand 3
A
78 91anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
183 188anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
195 202anti-parallel
Strand 4
A
217 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il