Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CJE entry

There is 1 chain in PDB entry 5CJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4TRP 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5CJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
18 28Right-handed alpha
Helix 3
AA3
A
49 58Right-handed alpha
Helix 4
AA4
A
65 70Right-handed 310
Helix 5
AA5
A
73 79Right-handed alpha
Helix 6
AA6
A
82 86Right-handed 310
Helix 7
AA7
A
89 99Right-handed alpha
Helix 8
AA8
A
100 102Right-handed 310
Helix 9
AA9
A
103 108Right-handed alpha
Helix 10
AB1
A
110 126Right-handed alpha
Helix 11
AB2
A
133 137Right-handed alpha
Helix 12
AB3
A
139 151Right-handed alpha
Helix 13
AB4
A
156 169Right-handed alpha
Helix 14
AB5
A
172 196Right-handed alpha
Helix 15
AB6
A
202 214Right-handed alpha
Helix 16
AB7
A
219 237Right-handed alpha
Helix 17
AB8
A
237 252Right-handed alpha
Helix 18
AB9
A
252 262Right-handed alpha
Helix 19
AC1
A
265 277Right-handed alpha
Helix 20
AC2
A
308 314Right-handed alpha
Helix 21
AC3
A
326 330Right-handed 310
Helix 22
AC4
A
346 365Right-handed alpha
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There are 4 sheets in PDB entry 5CJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
31 35parallel
Strand 3
A
43 47anti-parallel
Strand 4
A
305 307parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
287 288anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
390 392anti-parallel
Strand 3
A
369 370anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
298 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il