Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CJH entry

There are 2 chains in PDB entry 5CJH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 51	VAL 784
B	THR 51	LYS 783

There are 85 helices in PDB entry 5CJH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	72	Right-handed alpha
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	85	89	Right-handed 310
Helix 4	AA4	A	96	103	Right-handed alpha
Helix 5	AA5	A	105	118	Right-handed alpha
Helix 6	AA6	A	126	130	Right-handed 310
Helix 7	AA7	A	131	144	Right-handed alpha
Helix 8	AA8	A	158	162	Right-handed 310
Helix 9	AA9	A	164	172	Right-handed 310
Helix 10	AB1	A	173	189	Right-handed alpha
Helix 11	AB2	A	190	192	Right-handed 310
Helix 12	AB3	A	193	209	Right-handed alpha
Helix 13	AB4	A	256	260	Right-handed 310
Helix 14	AB5	A	278	282	Right-handed 310
Helix 15	AB6	A	284	299	Right-handed alpha
Helix 16	AB7	A	302	314	Right-handed alpha
Helix 17	AB8	A	324	328	Right-handed 310
Helix 18	AB9	A	331	335	Right-handed 310
Helix 19	AC1	A	336	340	Right-handed 310
Helix 20	AC2	A	352	356	Right-handed 310
Helix 21	AC3	A	374	383	Right-handed alpha
Helix 22	AC4	A	421	426	Right-handed alpha
Helix 23	AC5	A	427	429	Right-handed 310
Helix 24	AC6	A	430	443	Right-handed alpha
Helix 25	AC7	A	443	461	Right-handed alpha
Helix 26	AC8	A	465	469	Right-handed 310
Helix 27	AC9	A	479	483	Right-handed 310
Helix 28	AD1	A	494	507	Right-handed alpha
Helix 29	AD2	A	512	525	Right-handed alpha
Helix 30	AD3	A	539	543	Right-handed 310
Helix 31	AD4	A	545	552	Right-handed 310
Helix 32	AD5	A	553	572	Right-handed alpha
Helix 33	AD6	A	581	601	Right-handed alpha
Helix 34	AD7	A	617	621	Right-handed 310
Helix 35	AD8	A	622	628	Right-handed alpha
Helix 36	AD9	A	647	659	Right-handed alpha
Helix 37	AE1	A	662	676	Right-handed alpha
Helix 38	AE2	A	697	704	Right-handed alpha
Helix 39	AE3	A	736	740	Right-handed alpha
Helix 40	AE4	A	741	743	Right-handed 310
Helix 41	AE5	A	744	756	Right-handed alpha
Helix 42	AE6	A	759	776	Right-handed alpha
Helix 43	AE7	B	67	72	Right-handed alpha
Helix 44	AE8	B	78	82	Right-handed 310
Helix 45	AE9	B	85	89	Right-handed 310
Helix 46	AF1	B	96	103	Right-handed alpha
Helix 47	AF2	B	105	117	Right-handed alpha
Helix 48	AF3	B	126	130	Right-handed 310
Helix 49	AF4	B	131	144	Right-handed alpha
Helix 50	AF5	B	158	162	Right-handed 310
Helix 51	AF6	B	164	172	Right-handed 310
Helix 52	AF7	B	173	189	Right-handed alpha
Helix 53	AF8	B	190	192	Right-handed 310
Helix 54	AF9	B	193	208	Right-handed alpha
Helix 55	AG1	B	244	248	Right-handed 310
Helix 56	AG2	B	252	257	Right-handed alpha
Helix 57	AG3	B	258	260	Right-handed 310
Helix 58	AG4	B	278	282	Right-handed 310
Helix 59	AG5	B	284	299	Right-handed alpha
Helix 60	AG6	B	302	314	Right-handed alpha
Helix 61	AG7	B	324	328	Right-handed 310
Helix 62	AG8	B	331	335	Right-handed 310
Helix 63	AG9	B	336	340	Right-handed 310
Helix 64	AH1	B	352	356	Right-handed 310
Helix 65	AH2	B	374	383	Right-handed alpha
Helix 66	AH3	B	421	426	Right-handed alpha
Helix 67	AH4	B	427	429	Right-handed 310
Helix 68	AH5	B	430	443	Right-handed alpha
Helix 69	AH6	B	443	461	Right-handed alpha
Helix 70	AH7	B	465	469	Right-handed 310
Helix 71	AH8	B	479	483	Right-handed 310
Helix 72	AH9	B	494	506	Right-handed alpha
Helix 73	AI1	B	512	525	Right-handed alpha
Helix 74	AI2	B	539	543	Right-handed 310
Helix 75	AI3	B	545	552	Right-handed 310
Helix 76	AI4	B	553	573	Right-handed alpha
Helix 77	AI5	B	581	601	Right-handed alpha
Helix 78	AI6	B	622	628	Right-handed alpha
Helix 79	AI7	B	647	659	Right-handed alpha
Helix 80	AI8	B	662	676	Right-handed alpha
Helix 81	AI9	B	697	704	Right-handed alpha
Helix 82	AJ1	B	736	740	Right-handed alpha
Helix 83	AJ2	B	741	743	Right-handed 310
Helix 84	AJ3	B	744	756	Right-handed alpha
Helix 85	AJ4	B	759	776	Right-handed alpha

There are 8 sheets in PDB entry 5CJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	389	first strand
Strand 2	A	395	398	anti-parallel
Strand 3	A	419	420	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	408	first strand
Strand 2	A	411	416	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	634	first strand
Strand 2	A	639	640	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	712	first strand
Strand 2	A	719	724	anti-parallel
Strand 3	A	730	735	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	389	first strand
Strand 2	B	395	398	anti-parallel
Strand 3	B	419	420	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	407	first strand
Strand 2	B	415	416	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	712	first strand
Strand 2	B	719	724	anti-parallel
Strand 3	B	730	735	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CJH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJH