Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CJJ entry

There are 2 chains in PDB entry 5CJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1SER 188
B
 ASN -1SER 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5CJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
46 52Right-handed alpha
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
68 82Right-handed alpha
Helix 5
AA5
A
98 103Right-handed alpha
Helix 6
AA6
A
122 130Right-handed alpha
Helix 7
AA7
A
163 188Right-handed alpha
Helix 8
AA8
B
13 23Right-handed alpha
Helix 9
AA9
B
46 54Right-handed alpha
Helix 10
AB1
B
62 66Right-handed 310
Helix 11
AB2
B
68 82Right-handed alpha
Helix 12
AB3
B
98 103Right-handed alpha
Helix 13
AB4
B
122 130Right-handed alpha
Helix 14
AB5
B
163 187Right-handed alpha
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There are 3 sheets in PDB entry 5CJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
31 39anti-parallel
Strand 3
A
1 8parallel
Strand 4
A
87 90parallel
Strand 5
A
107 111parallel
Strand 6
A
134 141anti-parallel
Strand 7
A
151 158anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
31 40anti-parallel
Strand 3
B
58 60parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
31 40anti-parallel
Strand 3
B
2 9parallel
Strand 4
B
87 90parallel
Strand 5
B
107 111parallel
Strand 6
B
134 141anti-parallel
Strand 7
B
151 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il