Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CJO entry

There are 3 chains in PDB entry 5CJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 43	PHE 1014
H	GLU 4	LYS 227
L	MET 5	GLN 80

There are 44 helices in PDB entry 5CJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	99	Right-handed 310
Helix 2	AA2	A	105	115	Right-handed alpha
Helix 3	AA3	A	125	133	Right-handed alpha
Helix 4	AA4	A	157	171	Right-handed alpha
Helix 5	AA5	A	175	192	Right-handed alpha
Helix 6	AA6	A	196	208	Right-handed alpha
Helix 7	AA7	A	213	217	Right-handed 310
Helix 8	AA8	A	222	227	Right-handed alpha
Helix 9	AA9	A	227	233	Right-handed alpha
Helix 10	AB1	A	236	249	Right-handed alpha
Helix 11	AB2	A	250	252	Right-handed 310
Helix 12	AB3	A	263	275	Right-handed alpha
Helix 13	AB4	A	294	298	Right-handed 310
Helix 14	AB5	A	322	326	Right-handed 310
Helix 15	AB6	A	329	339	Right-handed alpha
Helix 16	AB7	A	345	352	Right-handed alpha
Helix 17	AB8	A	386	405	Right-handed alpha
Helix 18	AB9	A	407	424	Right-handed alpha
Helix 19	AC1	A	429	441	Right-handed alpha
Helix 20	AC2	A	460	470	Right-handed alpha
Helix 21	AC3	A	471	475	Right-handed 310
Helix 22	AC4	A	483	486	Right-handed 310
Helix 23	AC5	A	506	515	Right-handed alpha
Helix 24	AC6	A	586	614	Right-handed alpha
Helix 25	AC7	A	637	651	Right-handed alpha
Helix 26	AC8	A	655	672	Right-handed alpha
Helix 27	AC9	A	673	676	Right-handed 310
Helix 28	AD1	A	677	691	Right-handed alpha
Helix 29	AD2	A	696	705	Right-handed alpha
Helix 30	AD3	A	708	714	Right-handed alpha
Helix 31	AD4	A	715	721	Right-handed alpha
Helix 32	AD5	A	734	753	Right-handed alpha
Helix 33	AD6	A	759	763	Right-handed 310
Helix 34	AD7	A	801	815	Right-handed alpha
Helix 35	AD8	A	815	824	Right-handed alpha
Helix 36	AD9	A	855	876	Right-handed alpha
Helix 37	AE1	A	878	895	Right-handed alpha
Helix 38	AE2	A	899	913	Right-handed alpha
Helix 39	AE3	A	919	929	Right-handed alpha
Helix 40	AE4	A	932	944	Right-handed alpha
Helix 41	AE5	A	994	1002	Right-handed alpha
Helix 42	AE6	H	90	94	Right-handed 310
Helix 43	AE7	H	218	222	Right-handed 310
Helix 44	AE8	L	80	84	Right-handed 310

There are 16 sheets in PDB entry 5CJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	63	69	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	254	260	parallel
Strand 5	A	85	92	anti-parallel
Strand 6	A	147	154	anti-parallel
Strand 7	A	137	142	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	367	first strand
Strand 2	A	370	378	anti-parallel
Strand 3	A	312	320	anti-parallel
Strand 4	A	477	481	anti-parallel
Strand 5	A	300	305	parallel
Strand 6	A	499	504	anti-parallel
Strand 7	A	491	492	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	557	563	anti-parallel
Strand 3	A	722	731	parallel
Strand 4	A	571	579	anti-parallel
Strand 5	A	626	634	anti-parallel
Strand 6	A	616	623	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	557	563	anti-parallel
Strand 3	A	722	731	parallel
Strand 4	A	756	757	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	832	840	first strand
Strand 2	A	843	852	anti-parallel
Strand 3	A	789	799	anti-parallel
Strand 4	A	952	959	anti-parallel
Strand 5	A	775	782	parallel
Strand 6	A	990	991	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	129	130	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	36	42	anti-parallel
Strand 4	H	96	101	anti-parallel
Strand 5	H	126	127	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	141	first strand
Strand 2	H	153	163	anti-parallel
Strand 3	H	194	203	anti-parallel
Strand 4	H	182	183	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	141	first strand
Strand 2	H	153	163	anti-parallel
Strand 3	H	194	203	anti-parallel
Strand 4	H	187	188	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	171	first strand
Strand 2	H	215	217	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	8	first strand
Strand 2	L	20	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	97	100	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	135	141	anti-parallel
Strand 3	L	175	179	anti-parallel
Strand 4	L	163	165	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	148	149	first strand
Strand 2	L	197	198	anti-parallel
Strand 3	L	207	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJO