Analysis of interatomic Contacts of Structural Units in PDB entry:
5CJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CJP entry

There are 6 chains in PDB entry 5CJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 177
B
 MET 1LEU 177
C
 MET 1LEU 177
D
 MET 1LEU 177
E
 SER 875GLU 1246
F
 SER 875GLU 1246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 5CJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
67 72Right-handed 310
Helix 4
AA4
A
86 96Right-handed alpha
Helix 5
AA5
A
96 105Right-handed alpha
Helix 6
AA6
A
116 121Right-handed 310
Helix 7
AA7
A
122 132Right-handed alpha
Helix 8
AA8
A
138 149Right-handed alpha
Helix 9
AA9
A
164 176Right-handed alpha
Helix 10
AB1
B
15 26Right-handed alpha
Helix 11
AB2
B
61 65Right-handed 310
Helix 12
AB3
B
67 72Right-handed 310
Helix 13
AB4
B
86 96Right-handed alpha
Helix 14
AB5
B
96 105Right-handed alpha
Helix 15
AB6
B
116 120Right-handed 310
Helix 16
AB7
B
122 131Right-handed alpha
Helix 17
AB8
B
138 149Right-handed alpha
Helix 18
AB9
B
164 176Right-handed alpha
Helix 19
AC1
C
15 25Right-handed alpha
Helix 20
AC2
C
61 65Right-handed 310
Helix 21
AC3
C
67 72Right-handed 310
Helix 22
AC4
C
86 96Right-handed alpha
Helix 23
AC5
C
96 105Right-handed alpha
Helix 24
AC6
C
116 121Right-handed alpha
Helix 25
AC7
C
122 131Right-handed alpha
Helix 26
AC8
C
138 149Right-handed alpha
Helix 27
AC9
C
164 177Right-handed alpha
Helix 28
AD1
D
15 25Right-handed alpha
Helix 29
AD2
D
61 65Right-handed 310
Helix 30
AD3
D
67 72Right-handed 310
Helix 31
AD4
D
86 96Right-handed alpha
Helix 32
AD5
D
96 105Right-handed alpha
Helix 33
AD6
D
116 121Right-handed alpha
Helix 34
AD7
D
122 131Right-handed alpha
Helix 35
AD8
D
138 149Right-handed alpha
Helix 36
AD9
D
164 177Right-handed alpha
Helix 37
AE1
E
877 895Right-handed alpha
Helix 38
AE2
E
895 906Right-handed alpha
Helix 39
AE3
E
907 912Right-handed alpha
Helix 40
AE4
E
914 926Right-handed alpha
Helix 41
AE5
E
928 951Right-handed alpha
Helix 42
AE6
E
955 960Right-handed alpha
Helix 43
AE7
E
962 974Right-handed alpha
Helix 44
AE8
E
981 995Right-handed alpha
Helix 45
AE9
E
1003 1011Right-handed alpha
Helix 46
AF1
E
1011 1016Right-handed alpha
Helix 47
AF2
E
1017 1019Right-handed 310
Helix 48
AF3
E
1030 1035Right-handed alpha
Helix 49
AF4
E
1037 1065Right-handed alpha
Helix 50
AF5
E
1066 1069Right-handed 310
Helix 51
AF6
E
1070 1088Right-handed alpha
Helix 52
AF7
E
1092 1105Right-handed alpha
Helix 53
AF8
E
1109 1115Right-handed alpha
Helix 54
AF9
E
1131 1150Right-handed alpha
Helix 55
AG1
E
1158 1163Right-handed 310
Helix 56
AG2
E
1164 1183Right-handed alpha
Helix 57
AG3
E
1187 1192Right-handed alpha
Helix 58
AG4
E
1194 1199Right-handed alpha
Helix 59
AG5
E
1222 1224Right-handed 310
Helix 60
AG6
E
1225 1230Right-handed alpha
Helix 61
AG7
E
1231 1244Right-handed alpha
Helix 62
AG8
F
876 895Right-handed alpha
Helix 63
AG9
F
895 906Right-handed alpha
Helix 64
AH1
F
907 912Right-handed alpha
Helix 65
AH2
F
914 926Right-handed alpha
Helix 66
AH3
F
928 951Right-handed alpha
Helix 67
AH4
F
955 960Right-handed alpha
Helix 68
AH5
F
962 974Right-handed alpha
Helix 69
AH6
F
981 995Right-handed alpha
Helix 70
AH7
F
1003 1011Right-handed alpha
Helix 71
AH8
F
1011 1016Right-handed alpha
Helix 72
AH9
F
1017 1019Right-handed 310
Helix 73
AI1
F
1033 1036Right-handed 310
Helix 74
AI2
F
1037 1065Right-handed alpha
Helix 75
AI3
F
1066 1069Right-handed 310
Helix 76
AI4
F
1070 1088Right-handed alpha
Helix 77
AI5
F
1092 1105Right-handed alpha
Helix 78
AI6
F
1109 1115Right-handed alpha
Helix 79
AI7
F
1131 1150Right-handed alpha
Helix 80
AI8
F
1158 1163Right-handed 310
Helix 81
AI9
F
1164 1183Right-handed alpha
Helix 82
AJ1
F
1187 1192Right-handed alpha
Helix 83
AJ2
F
1194 1199Right-handed alpha
Helix 84
AJ3
F
1219 1224Right-handed alpha
Helix 85
AJ4
F
1236 1242Right-handed alpha
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There are 7 sheets in PDB entry 5CJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 44first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
3 10parallel
Strand 4
A
77 83parallel
Strand 5
A
110 115parallel
Strand 6
A
154 156parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
E
1202 1203parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 44first strand
Strand 2
B
51 58anti-parallel
Strand 3
B
3 10parallel
Strand 4
B
77 83parallel
Strand 5
B
110 115parallel
Strand 6
B
154 156parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
F
1202 1203parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 45first strand
Strand 2
C
50 58anti-parallel
Strand 3
C
3 9parallel
Strand 4
C
77 83parallel
Strand 5
C
110 115parallel
Strand 6
C
154 156parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 45first strand
Strand 2
D
50 58anti-parallel
Strand 3
D
3 9parallel
Strand 4
D
77 83parallel
Strand 5
D
110 115parallel
Strand 6
D
155 156parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1208 1214first strand
Strand 2
F
1208 1214anti-parallel
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