Analysis of interatomic Contacts of Structural Units in PDB entry:
5CK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CK0 entry

There is 1 chain in PDB entry 5CK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 40TYR 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5CK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 55Right-handed alpha
Helix 2
AA2
A
56 58Right-handed 310
Helix 3
AA3
A
80 86Right-handed 310
Helix 4
AA4
A
88 94Right-handed alpha
Helix 5
AA5
A
104 125Right-handed alpha
Helix 6
AA6
A
132 159Right-handed alpha
Helix 7
AA7
A
173 177Right-handed 310
Helix 8
AA8
A
182 201Right-handed alpha
Helix 9
AA9
A
215 232Right-handed alpha
Helix 10
AB1
A
233 236Right-handed 310
Helix 11
AB2
A
265 284Right-handed alpha
Helix 12
AB3
A
295 300Right-handed alpha
Helix 13
AB4
A
313 315Right-handed 310
Helix 14
AB5
A
316 330Right-handed alpha
Helix 15
AB6
A
333 337Right-handed 310
Helix 16
AB7
A
377 384Right-handed alpha
Helix 17
AB8
A
400 404Right-handed 310
Helix 18
AB9
A
417 421Right-handed 310
Helix 19
AC1
A
424 430Right-handed alpha
Helix 20
AC2
A
461 466Right-handed alpha
Helix 21
AC3
A
505 520Right-handed alpha
Helix 22
AC4
A
521 536Right-handed alpha
Helix 23
AC5
A
542 546Right-handed 310
Helix 24
AC6
A
551 564Right-handed alpha
Helix 25
AC7
A
569 577Right-handed alpha
Helix 26
AC8
A
579 585Right-handed alpha
Helix 27
AC9
A
600 605Right-handed alpha
Helix 28
AD1
A
617 622Right-handed 310
Helix 29
AD2
A
626 633Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5CK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
375 376anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
500 504anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 361first strand
Strand 2
A
367 369anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 433first strand
Strand 2
A
474 476anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 443first strand
Strand 2
A
446 449anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
492 493anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 591first strand
Strand 2
A
608 609anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il