Analysis of interatomic Contacts of Structural Units in PDB entry:
5CK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CK3 entry

There are 6 chains in PDB entry 5CK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 135
B
 PRO 51ILE 347
C
 LEU 3LEU 134
D
 TYR 47ILE 347
E
 MET 1LEU 134
F
 LEU 54ILE 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5CK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 37Right-handed alpha
Helix 2
AA2
A
89 107Right-handed alpha
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
122 135Right-handed alpha
Helix 5
AA5
B
62 73Right-handed alpha
Helix 6
AA6
B
150 163Right-handed alpha
Helix 7
AA7
B
210 232Right-handed alpha
Helix 8
AA8
B
259 281Right-handed alpha
Helix 9
AA9
B
311 319Right-handed 310
Helix 10
AB1
B
336 345Right-handed alpha
Helix 11
AB2
C
26 37Right-handed alpha
Helix 12
AB3
C
89 107Right-handed alpha
Helix 13
AB4
C
108 112Right-handed 310
Helix 14
AB5
C
123 134Right-handed alpha
Helix 15
AB6
D
62 73Right-handed alpha
Helix 16
AB7
D
153 163Right-handed alpha
Helix 17
AB8
D
210 230Right-handed alpha
Helix 18
AB9
D
259 280Right-handed alpha
Helix 19
AC1
D
311 317Right-handed alpha
Helix 20
AC2
D
336 345Right-handed alpha
Helix 21
AC3
E
26 38Right-handed alpha
Helix 22
AC4
E
89 107Right-handed alpha
Helix 23
AC5
E
108 110Right-handed 310
Helix 24
AC6
E
122 134Right-handed alpha
Helix 25
AC7
F
62 73Right-handed alpha
Helix 26
AC8
F
150 158Right-handed alpha
Helix 27
AC9
F
202 208Right-handed alpha
Helix 28
AD1
F
215 229Right-handed alpha
Helix 29
AD2
F
259 276Right-handed alpha
Helix 30
AD3
F
336 347Right-handed alpha
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There are 7 sheets in PDB entry 5CK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
5 10anti-parallel
Strand 3
A
76 80anti-parallel
Strand 4
A
67 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 117first strand
Strand 2
B
140 146anti-parallel
Strand 3
B
52 56parallel
Strand 4
B
193 201parallel
Strand 5
B
245 250parallel
Strand 6
B
322 326parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
81 82anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 18first strand
Strand 2
C
5 10anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
67 71anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 117first strand
Strand 2
D
140 145anti-parallel
Strand 3
D
51 56parallel
Strand 4
D
192 201parallel
Strand 5
D
245 250parallel
Strand 6
D
322 326parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 19first strand
Strand 2
E
6 10anti-parallel
Strand 3
E
76 80anti-parallel
Strand 4
E
68 71anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
199 201first strand
Strand 2
F
248 250parallel
Strand 3
F
325 326parallel
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