Analysis of interatomic Contacts of Structural Units in PDB entry:
5CK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CK7 entry

There is 1 chain in PDB entry 5CK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 48ASP 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5CK7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 65Right-handed alpha
Helix 2
AA2
A
89 96Right-handed alpha
Helix 3
AA3
A
111 126Right-handed alpha
Helix 4
AA4
A
135 149Right-handed alpha
Helix 5
AA5
A
158 169Right-handed alpha
Helix 6
AA6
A
182 189Right-handed alpha
Helix 7
AA7
A
196 200Right-handed 310
Helix 8
AA8
A
234 239Right-handed alpha
Helix 9
AA9
A
242 254Right-handed alpha
Helix 10
AB1
A
262 267Right-handed 310
Helix 11
AB2
A
270 288Right-handed alpha
Helix 12
AB3
A
303 314Right-handed alpha
Helix 13
AB4
A
315 318Right-handed 310
Helix 14
AB5
A
324 335Right-handed alpha
Helix 15
AB6
A
350 366Right-handed alpha
Helix 16
AB7
A
397 415Right-handed alpha
Helix 17
AB8
A
477 489Right-handed alpha
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There are 6 sheets in PDB entry 5CK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
174 177parallel
Strand 3
A
74 78parallel
Strand 4
A
257 260parallel
Strand 5
A
294 297parallel
Strand 6
A
320 323parallel
Strand 7
A
377 381parallel
Strand 8
A
385 391anti-parallel
Strand 9
A
459 465anti-parallel
Strand 10
A
452 456anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
227 232parallel
Strand 3
A
206 212anti-parallel
Strand 4
A
82 88parallel
Strand 5
A
153 157anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
491 492anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
467 469anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 433first strand
Strand 2
A
442 444anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il