Analysis of interatomic Contacts of Structural Units in PDB entry:
5CKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CKW entry

There are 2 chains in PDB entry 5CKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 0ASN 404
A
 MET 15ASN 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5CKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 12Right-handed alpha
Helix 2
AA2
B
16 29Right-handed alpha
Helix 3
AA3
B
29 38Right-handed alpha
Helix 4
AA4
B
45 54Right-handed alpha
Helix 5
AA5
B
111 127Right-handed alpha
Helix 6
AA6
B
153 159Right-handed alpha
Helix 7
AA7
B
165 189Right-handed alpha
Helix 8
AA8
B
197 199Right-handed 310
Helix 9
AA9
B
227 229Right-handed 310
Helix 10
AB1
B
230 234Right-handed 310
Helix 11
AB2
B
248 264Right-handed alpha
Helix 12
AB3
B
265 268Right-handed 310
Helix 13
AB4
B
269 274Right-handed alpha
Helix 14
AB5
B
281 283Right-handed 310
Helix 15
AB6
B
284 299Right-handed alpha
Helix 16
AB7
B
302 314Right-handed alpha
Helix 17
AB8
B
325 342Right-handed alpha
Helix 18
AB9
B
346 366Right-handed alpha
Helix 19
AC1
B
371 382Right-handed alpha
Helix 20
AC2
B
388 403Right-handed alpha
Helix 21
AC3
A
16 28Right-handed alpha
Helix 22
AC4
A
112 126Right-handed alpha
Helix 23
AC5
A
153 160Right-handed alpha
Helix 24
AC6
A
165 189Right-handed alpha
Helix 25
AC7
A
197 199Right-handed 310
Helix 26
AC8
A
227 229Right-handed 310
Helix 27
AC9
A
230 234Right-handed 310
Helix 28
AD1
A
248 265Right-handed alpha
Helix 29
AD2
A
266 268Right-handed 310
Helix 30
AD3
A
269 274Right-handed alpha
Helix 31
AD4
A
281 283Right-handed 310
Helix 32
AD5
A
284 299Right-handed alpha
Helix 33
AD6
A
302 314Right-handed alpha
Helix 34
AD7
A
325 340Right-handed alpha
Helix 35
AD8
A
346 366Right-handed alpha
Helix 36
AD9
A
371 384Right-handed alpha
Helix 37
AE1
A
388 403Right-handed alpha
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There are 6 sheets in PDB entry 5CKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
87 94anti-parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
140 146anti-parallel
Strand 5
B
129 135anti-parallel
Strand 6
B
57 63anti-parallel
Strand 7
B
68 74anti-parallel
Strand 8
B
87 94anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
201 203anti-parallel
Strand 3
B
209 211anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
244 245anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
99 107anti-parallel
Strand 5
A
140 146anti-parallel
Strand 6
A
129 134anti-parallel
Strand 7
A
59 64anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
201 203anti-parallel
Strand 3
A
209 211anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
244 245anti-parallel
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