Analysis of interatomic Contacts of Structural Units in PDB entry:
5CKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CKY entry

There are 3 chains in PDB entry 5CKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 GLU 73SER 396
D
 A 1 A 22
E
 T 1 T 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5CKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
74 83Right-handed alpha
Helix 2
AA2
O
85 93Right-handed alpha
Helix 3
AA3
O
94 99Right-handed 310
Helix 4
AA4
O
103 114Right-handed alpha
Helix 5
AA5
O
117 128Right-handed alpha
Helix 6
AA6
O
129 134Right-handed 310
Helix 7
AA7
O
135 147Right-handed alpha
Helix 8
AA8
O
152 163Right-handed alpha
Helix 9
AA9
O
163 169Right-handed alpha
Helix 10
AB1
O
172 186Right-handed alpha
Helix 11
AB2
O
189 200Right-handed alpha
Helix 12
AB3
O
201 206Right-handed alpha
Helix 13
AB4
O
207 225Right-handed alpha
Helix 14
AB5
O
229 241Right-handed alpha
Helix 15
AB6
O
243 247Right-handed 310
Helix 16
AB7
O
248 263Right-handed alpha
Helix 17
AB8
O
266 276Right-handed alpha
Helix 18
AB9
O
278 284Right-handed 310
Helix 19
AC1
O
287 302Right-handed alpha
Helix 20
AC2
O
306 316Right-handed alpha
Helix 21
AC3
O
317 323Right-handed 310
Helix 22
AC4
O
324 337Right-handed alpha
Helix 23
AC5
O
341 348Right-handed alpha
Helix 24
AC6
O
349 354Right-handed 310
Helix 25
AC7
O
355 368Right-handed alpha
Helix 26
AC8
O
377 383Right-handed 310
Helix 27
AC9
O
384 395Right-handed alpha
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There are no sheets in PDB entry 5CKY
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il