Analysis of interatomic Contacts of Structural Units in PDB entry:
5CL1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CL1 entry

There are 4 chains in PDB entry 5CL1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	SER 1133
B	LYS 1	SER 1133
C	ARG 44	GLU 160
D	ARG 43	GLU 160

There are 48 helices in PDB entry 5CL1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	31	Right-handed alpha
Helix 2	AA2	A	42	54	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	82	89	Right-handed alpha
Helix 5	AA5	A	90	96	Right-handed alpha
Helix 6	AA6	A	131	141	Right-handed alpha
Helix 7	AA7	A	153	162	Right-handed alpha
Helix 8	AA8	A	163	165	Right-handed 310
Helix 9	AA9	A	185	201	Right-handed alpha
Helix 10	AB1	A	209	219	Right-handed alpha
Helix 11	AB2	A	228	230	Right-handed 310
Helix 12	AB3	A	231	238	Right-handed alpha
Helix 13	AB4	A	272	282	Right-handed alpha
Helix 14	AB5	A	286	297	Right-handed alpha
Helix 15	AB6	A	304	312	Right-handed alpha
Helix 16	AB7	A	314	327	Right-handed alpha
Helix 17	AB8	A	333	335	Right-handed 310
Helix 18	AB9	A	336	352	Right-handed alpha
Helix 19	AC1	A	356	368	Right-handed alpha
Helix 20	AC2	B	16	31	Right-handed alpha
Helix 21	AC3	B	42	54	Right-handed alpha
Helix 22	AC4	B	64	74	Right-handed alpha
Helix 23	AC5	B	82	89	Right-handed alpha
Helix 24	AC6	B	90	96	Right-handed alpha
Helix 25	AC7	B	131	141	Right-handed alpha
Helix 26	AC8	B	153	162	Right-handed alpha
Helix 27	AC9	B	163	165	Right-handed 310
Helix 28	AD1	B	185	201	Right-handed alpha
Helix 29	AD2	B	209	219	Right-handed alpha
Helix 30	AD3	B	228	230	Right-handed 310
Helix 31	AD4	B	231	238	Right-handed alpha
Helix 32	AD5	B	272	282	Right-handed alpha
Helix 33	AD6	B	286	297	Right-handed alpha
Helix 34	AD7	B	304	312	Right-handed alpha
Helix 35	AD8	B	314	327	Right-handed alpha
Helix 36	AD9	B	333	335	Right-handed 310
Helix 37	AE1	B	336	352	Right-handed alpha
Helix 38	AE2	B	356	368	Right-handed alpha
Helix 39	AE3	C	71	80	Right-handed alpha
Helix 40	AE4	C	82	89	Right-handed alpha
Helix 41	AE5	C	93	103	Right-handed alpha
Helix 42	AE6	C	117	135	Right-handed alpha
Helix 43	AE7	C	140	144	Right-handed 310
Helix 44	AE8	D	71	80	Right-handed alpha
Helix 45	AE9	D	82	89	Right-handed alpha
Helix 46	AF1	D	93	103	Right-handed alpha
Helix 47	AF2	D	117	135	Right-handed alpha
Helix 48	AF3	D	140	144	Right-handed 310

There are 21 sheets in PDB entry 5CL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	262	266	anti-parallel
Strand 5	A	105	107	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	301	302	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	176	177	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	328	329	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1040	1048	first strand
Strand 2	A	1058	1067	anti-parallel
Strand 3	B	1073	1077	anti-parallel
Strand 4	B	1089	1092	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1089	1092	first strand
Strand 2	A	1073	1077	anti-parallel
Strand 3	B	1058	1067	anti-parallel
Strand 4	B	1040	1048	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1079	1080	first strand
Strand 2	B	1119	1130	anti-parallel
Strand 3	B	1094	1104	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1104	first strand
Strand 2	A	1120	1130	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	262	266	anti-parallel
Strand 5	B	105	107	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	301	302	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	176	177	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	253	254	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	328	329	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1107	1108	first strand
Strand 2	B	1116	1117	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	60	61	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	158	159	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	60	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CL1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CL1