Analysis of interatomic Contacts of Structural Units in PDB entry:
5CLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CLJ entry

There are 2 chains in PDB entry 5CLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20THR 179
B
 SER 20THR 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5CLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 32Right-handed 310
Helix 2
AA2
A
33 47Right-handed alpha
Helix 3
AA3
A
61 71Right-handed alpha
Helix 4
AA4
A
89 98Right-handed alpha
Helix 5
AA5
A
114 123Right-handed alpha
Helix 6
AA6
A
136 153Right-handed alpha
Helix 7
AA7
A
155 173Right-handed alpha
Helix 8
AA8
B
30 32Right-handed 310
Helix 9
AA9
B
33 47Right-handed alpha
Helix 10
AB1
B
61 72Right-handed alpha
Helix 11
AB2
B
89 98Right-handed alpha
Helix 12
AB3
B
114 123Right-handed alpha
Helix 13
AB4
B
136 153Right-handed alpha
Helix 14
AB5
B
155 172Right-handed alpha
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There are 2 sheets in PDB entry 5CLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
24 28parallel
Strand 3
A
79 84parallel
Strand 4
A
102 106parallel
Strand 5
A
131 132parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
24 28parallel
Strand 3
B
79 85parallel
Strand 4
B
102 107parallel
Strand 5
B
131 132parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il