Analysis of interatomic Contacts of Structural Units in PDB entry:
5CLT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CLT entry

There are 3 chains in PDB entry 5CLT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 44	ASP 699
B	VAL 43	LEU 700
C	PHE 45	ASP 699

There are 76 helices in PDB entry 5CLT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	64	Right-handed alpha
Helix 2	AA2	A	65	70	Right-handed alpha
Helix 3	AA3	A	71	75	Right-handed 310
Helix 4	AA4	A	104	106	Right-handed 310
Helix 5	AA5	A	215	223	Right-handed alpha
Helix 6	AA6	A	223	230	Right-handed alpha
Helix 7	AA7	A	245	249	Right-handed 310
Helix 8	AA8	A	261	264	Right-handed 310
Helix 9	AA9	A	265	279	Right-handed alpha
Helix 10	AB1	A	314	316	Right-handed 310
Helix 11	AB2	A	331	349	Right-handed alpha
Helix 12	AB3	A	358	365	Right-handed alpha
Helix 13	AB4	A	386	404	Right-handed alpha
Helix 14	AB5	A	423	427	Right-handed 310
Helix 15	AB6	A	437	450	Right-handed alpha
Helix 16	AB7	A	451	455	Right-handed 310
Helix 17	AB8	A	456	466	Right-handed alpha
Helix 18	AB9	A	479	484	Right-handed 310
Helix 19	AC1	A	489	496	Right-handed alpha
Helix 20	AC2	A	497	500	Right-handed 310
Helix 21	AC3	A	510	531	Right-handed alpha
Helix 22	AC4	A	540	544	Right-handed 310
Helix 23	AC5	A	553	557	Right-handed 310
Helix 24	AC6	A	566	572	Right-handed 310
Helix 25	AC7	A	576	595	Right-handed alpha
Helix 26	AC8	A	654	658	Right-handed 310
Helix 27	AC9	B	44	64	Right-handed alpha
Helix 28	AD1	B	65	70	Right-handed alpha
Helix 29	AD2	B	71	75	Right-handed 310
Helix 30	AD3	B	104	106	Right-handed 310
Helix 31	AD4	B	215	223	Right-handed alpha
Helix 32	AD5	B	223	230	Right-handed alpha
Helix 33	AD6	B	245	249	Right-handed 310
Helix 34	AD7	B	261	264	Right-handed 310
Helix 35	AD8	B	265	279	Right-handed alpha
Helix 36	AD9	B	331	348	Right-handed alpha
Helix 37	AE1	B	358	364	Right-handed alpha
Helix 38	AE2	B	386	404	Right-handed alpha
Helix 39	AE3	B	423	427	Right-handed 310
Helix 40	AE4	B	437	450	Right-handed alpha
Helix 41	AE5	B	451	455	Right-handed 310
Helix 42	AE6	B	456	466	Right-handed alpha
Helix 43	AE7	B	480	484	Right-handed 310
Helix 44	AE8	B	489	496	Right-handed alpha
Helix 45	AE9	B	497	500	Right-handed 310
Helix 46	AF1	B	510	531	Right-handed alpha
Helix 47	AF2	B	540	544	Right-handed 310
Helix 48	AF3	B	553	557	Right-handed 310
Helix 49	AF4	B	566	571	Right-handed 310
Helix 50	AF5	B	576	595	Right-handed alpha
Helix 51	AF6	B	654	658	Right-handed 310
Helix 52	AF7	C	46	63	Right-handed alpha
Helix 53	AF8	C	65	70	Right-handed alpha
Helix 54	AF9	C	71	75	Right-handed 310
Helix 55	AG1	C	104	106	Right-handed 310
Helix 56	AG2	C	215	223	Right-handed alpha
Helix 57	AG3	C	223	231	Right-handed alpha
Helix 58	AG4	C	245	249	Right-handed 310
Helix 59	AG5	C	261	264	Right-handed 310
Helix 60	AG6	C	265	279	Right-handed alpha
Helix 61	AG7	C	331	348	Right-handed alpha
Helix 62	AG8	C	358	364	Right-handed alpha
Helix 63	AG9	C	386	404	Right-handed alpha
Helix 64	AH1	C	423	427	Right-handed 310
Helix 65	AH2	C	437	450	Right-handed alpha
Helix 66	AH3	C	451	455	Right-handed 310
Helix 67	AH4	C	456	466	Right-handed alpha
Helix 68	AH5	C	479	484	Right-handed 310
Helix 69	AH6	C	489	496	Right-handed alpha
Helix 70	AH7	C	497	500	Right-handed 310
Helix 71	AH8	C	510	531	Right-handed alpha
Helix 72	AH9	C	540	544	Right-handed 310
Helix 73	AI1	C	553	557	Right-handed 310
Helix 74	AI2	C	566	572	Right-handed 310
Helix 75	AI3	C	576	595	Right-handed alpha
Helix 76	AI4	C	654	658	Right-handed 310

There are 23 sheets in PDB entry 5CLT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	86	91	anti-parallel
Strand 3	A	121	126	anti-parallel
Strand 4	A	115	116	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	141	147	anti-parallel
Strand 3	A	153	156	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	141	147	anti-parallel
Strand 3	A	174	176	anti-parallel
Strand 4	A	164	165	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	203	first strand
Strand 2	A	234	238	parallel
Strand 3	A	282	287	parallel
Strand 4	A	353	356	parallel
Strand 5	A	408	411	parallel
Strand 6	A	433	435	parallel
Strand 7	A	472	475	parallel
Strand 8	A	534	538	parallel
Strand 9	A	197	203	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	243	first strand
Strand 2	A	253	259	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	324	325	anti-parallel
Strand 3	A	318	319	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	608	first strand
Strand 2	A	613	618	anti-parallel
Strand 3	A	621	626	anti-parallel
Strand 4	A	691	697	anti-parallel
Strand 5	A	644	651	anti-parallel
Strand 6	A	669	671	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	640	first strand
Strand 2	A	681	687	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	121	126	anti-parallel
Strand 4	B	115	116	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	102	first strand
Strand 2	B	141	147	anti-parallel
Strand 3	B	153	156	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	102	first strand
Strand 2	B	141	147	anti-parallel
Strand 3	B	174	176	anti-parallel
Strand 4	B	164	165	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	433	435	parallel
Strand 3	B	408	411	parallel
Strand 4	B	353	357	parallel
Strand 5	B	282	288	parallel
Strand 6	B	234	238	parallel
Strand 7	B	197	203	parallel
Strand 8	B	534	538	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	255	259	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	324	325	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	608	first strand
Strand 2	B	613	618	anti-parallel
Strand 3	B	621	626	anti-parallel
Strand 4	B	691	698	anti-parallel
Strand 5	B	644	651	anti-parallel
Strand 6	B	669	676	anti-parallel
Strand 7	B	679	687	anti-parallel
Strand 8	B	633	640	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	86	91	anti-parallel
Strand 3	C	121	126	anti-parallel
Strand 4	C	115	116	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	102	first strand
Strand 2	C	141	147	anti-parallel
Strand 3	C	153	156	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	102	first strand
Strand 2	C	141	147	anti-parallel
Strand 3	C	174	176	anti-parallel
Strand 4	C	164	165	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	203	first strand
Strand 2	C	234	238	parallel
Strand 3	C	282	288	parallel
Strand 4	C	353	357	parallel
Strand 5	C	408	411	parallel
Strand 6	C	433	435	parallel
Strand 7	C	472	476	parallel
Strand 8	C	534	538	parallel
Strand 9	C	197	203	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	242	first strand
Strand 2	C	255	259	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	324	325	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	608	first strand
Strand 2	C	613	618	anti-parallel
Strand 3	C	621	626	anti-parallel
Strand 4	C	692	697	anti-parallel
Strand 5	C	644	651	anti-parallel
Strand 6	C	669	671	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	640	first strand
Strand 2	C	681	687	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CLT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CLT