Analysis of interatomic Contacts of Structural Units in PDB entry:
5CM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CM0 entry

There are 3 chains in PDB entry 5CM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	ARG 292
B	GLU 3	TYR 291
C	GLU 3	TYR 291

There are 28 helices in PDB entry 5CM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	30	Right-handed alpha
Helix 2	AA2	A	46	61	Right-handed alpha
Helix 3	AA3	A	68	83	Right-handed alpha
Helix 4	AA4	A	104	108	Right-handed 310
Helix 5	AA5	A	156	169	Right-handed alpha
Helix 6	AA6	A	203	207	Right-handed 310
Helix 7	AA7	A	210	223	Right-handed alpha
Helix 8	AA8	A	233	240	Right-handed alpha
Helix 9	AA9	A	269	286	Right-handed alpha
Helix 10	AB1	B	16	18	Right-handed 310
Helix 11	AB2	B	24	30	Right-handed alpha
Helix 12	AB3	B	46	61	Right-handed alpha
Helix 13	AB4	B	68	83	Right-handed alpha
Helix 14	AB5	B	104	108	Right-handed 310
Helix 15	AB6	B	156	169	Right-handed alpha
Helix 16	AB7	B	203	207	Right-handed 310
Helix 17	AB8	B	210	223	Right-handed alpha
Helix 18	AB9	B	233	239	Right-handed alpha
Helix 19	AC1	B	269	286	Right-handed alpha
Helix 20	AC2	C	24	30	Right-handed alpha
Helix 21	AC3	C	46	61	Right-handed alpha
Helix 22	AC4	C	68	83	Right-handed alpha
Helix 23	AC5	C	104	108	Right-handed 310
Helix 24	AC6	C	156	169	Right-handed alpha
Helix 25	AC7	C	203	207	Right-handed 310
Helix 26	AC8	C	210	223	Right-handed alpha
Helix 27	AC9	C	233	240	Right-handed alpha
Helix 28	AD1	C	269	286	Right-handed alpha

There are 13 sheets in PDB entry 5CM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	5	8	anti-parallel
Strand 3	A	112	119	anti-parallel
Strand 4	A	88	95	anti-parallel
Strand 5	A	32	34	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	5	8	anti-parallel
Strand 3	A	112	119	anti-parallel
Strand 4	A	88	95	anti-parallel
Strand 5	A	37	40	anti-parallel
Strand 6	A	43	44	anti-parallel
Strand 7	A	288	289	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	C	19	21	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	173	177	anti-parallel
Strand 3	A	132	136	parallel
Strand 4	A	251	258	parallel
Strand 5	A	242	247	anti-parallel
Strand 6	A	190	195	anti-parallel
Strand 7	A	198	201	anti-parallel
Strand 8	A	227	229	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	173	177	anti-parallel
Strand 3	A	132	136	parallel
Strand 4	A	251	258	parallel
Strand 5	A	261	262	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	5	8	anti-parallel
Strand 3	B	112	118	anti-parallel
Strand 4	B	88	95	anti-parallel
Strand 5	B	32	34	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	5	8	anti-parallel
Strand 3	B	112	118	anti-parallel
Strand 4	B	88	95	anti-parallel
Strand 5	B	37	40	anti-parallel
Strand 6	B	43	44	anti-parallel
Strand 7	B	288	289	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	173	177	anti-parallel
Strand 3	B	132	136	parallel
Strand 4	B	251	258	parallel
Strand 5	B	242	247	anti-parallel
Strand 6	B	190	195	anti-parallel
Strand 7	B	198	201	anti-parallel
Strand 8	B	227	229	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	173	177	anti-parallel
Strand 3	B	132	136	parallel
Strand 4	B	251	258	parallel
Strand 5	B	261	262	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	5	8	anti-parallel
Strand 3	C	112	119	anti-parallel
Strand 4	C	88	95	anti-parallel
Strand 5	C	32	34	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	5	8	anti-parallel
Strand 3	C	112	119	anti-parallel
Strand 4	C	88	95	anti-parallel
Strand 5	C	37	40	anti-parallel
Strand 6	C	43	44	anti-parallel
Strand 7	C	288	289	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	132	136	parallel
Strand 4	C	251	258	parallel
Strand 5	C	242	247	anti-parallel
Strand 6	C	190	195	anti-parallel
Strand 7	C	198	201	anti-parallel
Strand 8	C	227	229	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	132	136	parallel
Strand 4	C	251	258	parallel
Strand 5	C	261	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CM0