Analysis of interatomic Contacts of Structural Units in PDB entry:
5CM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CM2 entry

There are 2 chains in PDB entry 5CM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Z
 THR 39TRP 233
M
 MET 1LEU 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5CM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Z
45 53Right-handed alpha
Helix 2
AA2
Z
85 96Right-handed alpha
Helix 3
AA3
Z
124 128Right-handed 310
Helix 4
AA4
Z
130 144Right-handed alpha
Helix 5
AA5
Z
200 208Right-handed alpha
Helix 6
AA6
M
3 9Right-handed 310
Helix 7
AA7
M
13 19Right-handed alpha
Helix 8
AA8
M
40 48Right-handed alpha
Helix 9
AA9
M
52 63Right-handed alpha
Helix 10
AB1
M
80 82Right-handed 310
Helix 11
AB2
M
83 95Right-handed alpha
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There are 3 sheets in PDB entry 5CM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
100 103first strand
Strand 2
Z
78 83parallel
Strand 3
Z
59 63parallel
Strand 4
Z
116 122parallel
Strand 5
Z
145 156parallel
Strand 6
Z
222 229anti-parallel
Strand 7
Z
211 219anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
174 183first strand
Strand 2
Z
186 195anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
26 34first strand
Strand 2
M
97 105anti-parallel
Strand 3
M
112 116anti-parallel
Strand 4
M
119 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il