Analysis of interatomic Contacts of Structural Units in PDB entry:
5CM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CM6 entry

There are 2 chains in PDB entry 5CM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 26ASN 356
B
 LYS 26LEU 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 5CM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 58Right-handed alpha
Helix 2
AA2
A
68 73Right-handed alpha
Helix 3
AA3
A
77 85Right-handed alpha
Helix 4
AA4
A
93 98Right-handed 310
Helix 5
AA5
A
101 108Right-handed 310
Helix 6
AA6
A
115 126Right-handed alpha
Helix 7
AA7
A
127 137Right-handed alpha
Helix 8
AA8
A
163 168Right-handed 310
Helix 9
AA9
A
175 185Right-handed alpha
Helix 10
AB1
A
193 195Right-handed 310
Helix 11
AB2
A
196 203Right-handed alpha
Helix 12
AB3
A
213 221Right-handed alpha
Helix 13
AB4
A
222 225Right-handed 310
Helix 14
AB5
A
246 251Right-handed alpha
Helix 15
AB6
A
253 287Right-handed alpha
Helix 16
AB7
A
299 320Right-handed alpha
Helix 17
AB8
A
321 345Right-handed alpha
Helix 18
AB9
A
345 352Right-handed alpha
Helix 19
AC1
B
42 58Right-handed alpha
Helix 20
AC2
B
68 73Right-handed alpha
Helix 21
AC3
B
77 85Right-handed alpha
Helix 22
AC4
B
93 98Right-handed 310
Helix 23
AC5
B
101 108Right-handed 310
Helix 24
AC6
B
115 126Right-handed alpha
Helix 25
AC7
B
127 137Right-handed alpha
Helix 26
AC8
B
163 168Right-handed 310
Helix 27
AC9
B
175 185Right-handed alpha
Helix 28
AD1
B
193 195Right-handed 310
Helix 29
AD2
B
196 203Right-handed alpha
Helix 30
AD3
B
213 218Right-handed alpha
Helix 31
AD4
B
219 225Right-handed 310
Helix 32
AD5
B
246 252Right-handed alpha
Helix 33
AD6
B
253 290Right-handed alpha
Helix 34
AD7
B
299 320Right-handed alpha
Helix 35
AD8
B
321 345Right-handed alpha
Helix 36
AD9
B
345 353Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5CM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
28 34parallel
Strand 3
A
89 92parallel
Strand 4
A
239 245anti-parallel
Strand 5
A
141 148anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
171 173parallel
Strand 3
A
208 209parallel
Strand 4
A
155 157anti-parallel
Strand 5
A
228 230anti-parallel
Strand 6
A
294 296parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 67first strand
Strand 2
B
28 34parallel
Strand 3
B
89 92parallel
Strand 4
B
239 245anti-parallel
Strand 5
B
141 148anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
171 173parallel
Strand 3
B
208 209parallel
Strand 4
B
155 157anti-parallel
Strand 5
B
228 230anti-parallel
Strand 6
B
294 296parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il