Analysis of interatomic Contacts of Structural Units in PDB entry:
5CM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CM8 entry

There are 2 chains in PDB entry 5CM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 54GLY 514
B
 GLY 8ASP 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5CM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 105Right-handed alpha
Helix 2
AA2
A
115 124Right-handed alpha
Helix 3
AA3
A
125 127Right-handed 310
Helix 4
AA4
A
129 143Right-handed alpha
Helix 5
AA5
A
148 170Right-handed alpha
Helix 6
AA6
A
171 174Right-handed 310
Helix 7
AA7
A
175 177Right-handed 310
Helix 8
AA8
A
178 192Right-handed alpha
Helix 9
AA9
A
204 213Right-handed alpha
Helix 10
AB1
A
235 242Right-handed 310
Helix 11
AB2
A
243 261Right-handed alpha
Helix 12
AB3
A
263 267Right-handed 310
Helix 13
AB4
A
268 273Right-handed alpha
Helix 14
AB5
A
284 306Right-handed alpha
Helix 15
AB6
A
324 346Right-handed alpha
Helix 16
AB7
A
347 360Right-handed alpha
Helix 17
AB8
A
360 365Right-handed alpha
Helix 18
AB9
A
366 372Right-handed alpha
Helix 19
AC1
A
374 388Right-handed alpha
Helix 20
AC2
A
390 402Right-handed alpha
Helix 21
AC3
A
432 446Right-handed alpha
Helix 22
AC4
A
457 478Right-handed alpha
Helix 23
AC5
A
485 494Right-handed alpha
Helix 24
AC6
A
499 511Right-handed alpha
Helix 25
AC7
B
23 33Right-handed alpha
Helix 26
AC8
B
74 81Right-handed alpha
Helix 27
AC9
B
95 100Right-handed alpha
Helix 28
AD1
B
100 110Right-handed alpha
Helix 29
AD2
B
135 144Right-handed alpha
Helix 30
AD3
B
145 147Right-handed 310
Helix 31
AD4
B
160 178Right-handed alpha
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There are 3 sheets in PDB entry 5CM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 62first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
455 456anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
318 320anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 54first strand
Strand 2
B
57 65anti-parallel
Strand 3
B
11 17parallel
Strand 4
B
85 90parallel
Strand 5
B
119 123parallel
Strand 6
B
150 152parallel
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