Analysis of interatomic Contacts of Structural Units in PDB entry:
5CM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CM9 entry

There are 4 chains in PDB entry 5CM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 54GLY 514
B
 ALA 53GLY 514
C
 ALA 10LYS 176
D
 ALA 10ASP 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 5CM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 105Right-handed alpha
Helix 2
AA2
A
108 113Right-handed alpha
Helix 3
AA3
A
116 124Right-handed alpha
Helix 4
AA4
A
125 127Right-handed 310
Helix 5
AA5
A
129 144Right-handed alpha
Helix 6
AA6
A
148 170Right-handed alpha
Helix 7
AA7
A
171 174Right-handed 310
Helix 8
AA8
A
175 177Right-handed 310
Helix 9
AA9
A
178 192Right-handed alpha
Helix 10
AB1
A
204 216Right-handed alpha
Helix 11
AB2
A
235 242Right-handed 310
Helix 12
AB3
A
243 261Right-handed alpha
Helix 13
AB4
A
263 267Right-handed 310
Helix 14
AB5
A
268 273Right-handed alpha
Helix 15
AB6
A
284 307Right-handed alpha
Helix 16
AB7
A
324 345Right-handed alpha
Helix 17
AB8
A
347 360Right-handed alpha
Helix 18
AB9
A
360 365Right-handed alpha
Helix 19
AC1
A
366 372Right-handed alpha
Helix 20
AC2
A
374 386Right-handed alpha
Helix 21
AC3
A
433 446Right-handed alpha
Helix 22
AC4
A
457 478Right-handed alpha
Helix 23
AC5
A
485 494Right-handed alpha
Helix 24
AC6
A
499 511Right-handed alpha
Helix 25
AC7
B
96 105Right-handed alpha
Helix 26
AC8
B
108 113Right-handed alpha
Helix 27
AC9
B
115 124Right-handed alpha
Helix 28
AD1
B
125 127Right-handed 310
Helix 29
AD2
B
129 144Right-handed alpha
Helix 30
AD3
B
148 170Right-handed alpha
Helix 31
AD4
B
171 174Right-handed 310
Helix 32
AD5
B
178 192Right-handed alpha
Helix 33
AD6
B
204 212Right-handed alpha
Helix 34
AD7
B
235 242Right-handed 310
Helix 35
AD8
B
243 261Right-handed alpha
Helix 36
AD9
B
263 267Right-handed 310
Helix 37
AE1
B
268 273Right-handed alpha
Helix 38
AE2
B
284 306Right-handed alpha
Helix 39
AE3
B
324 345Right-handed alpha
Helix 40
AE4
B
347 359Right-handed alpha
Helix 41
AE5
B
360 365Right-handed alpha
Helix 42
AE6
B
366 372Right-handed alpha
Helix 43
AE7
B
374 386Right-handed alpha
Helix 44
AE8
B
432 446Right-handed alpha
Helix 45
AE9
B
457 478Right-handed alpha
Helix 46
AF1
B
485 494Right-handed alpha
Helix 47
AF2
B
499 511Right-handed alpha
Helix 48
AF3
C
23 33Right-handed alpha
Helix 49
AF4
C
72 83Right-handed alpha
Helix 50
AF5
C
94 100Right-handed alpha
Helix 51
AF6
C
100 112Right-handed alpha
Helix 52
AF7
C
135 146Right-handed alpha
Helix 53
AF8
C
160 176Right-handed alpha
Helix 54
AF9
D
23 33Right-handed alpha
Helix 55
AG1
D
72 83Right-handed alpha
Helix 56
AG2
D
94 100Right-handed alpha
Helix 57
AG3
D
100 113Right-handed alpha
Helix 58
AG4
D
135 146Right-handed alpha
Helix 59
AG5
D
160 176Right-handed alpha
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There are 6 sheets in PDB entry 5CM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
455 456anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
318 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 61first strand
Strand 2
B
65 73anti-parallel
Strand 3
B
87 95anti-parallel
Strand 4
B
455 456anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 310first strand
Strand 2
B
318 320anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 53first strand
Strand 2
C
58 65anti-parallel
Strand 3
C
11 18parallel
Strand 4
C
85 91parallel
Strand 5
C
119 125parallel
Strand 6
C
150 154parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 54first strand
Strand 2
D
57 65anti-parallel
Strand 3
D
11 18parallel
Strand 4
D
85 91parallel
Strand 5
D
119 124parallel
Strand 6
D
150 153parallel
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