Analysis of interatomic Contacts of Structural Units in PDB entry:
5CMN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CMN entry

There are 4 chains in PDB entry 5CMN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 30	ALA 350
B	SER 30	ALA 350
C	SER 30	ALA 350
D	SER 30	MET 313

There are 42 helices in PDB entry 5CMN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	75	Right-handed 310
Helix 2	AA2	A	77	82	Right-handed 310
Helix 3	AA3	A	120	126	Right-handed alpha
Helix 4	AA4	A	148	152	Right-handed 310
Helix 5	AA5	A	191	196	Right-handed alpha
Helix 6	AA6	A	212	216	Right-handed 310
Helix 7	AA7	A	310	312	Right-handed 310
Helix 8	AA8	A	313	322	Right-handed alpha
Helix 9	AA9	A	337	341	Right-handed 310
Helix 10	AB1	A	344	348	Right-handed 310
Helix 11	AB2	B	71	75	Right-handed 310
Helix 12	AB3	B	77	82	Right-handed 310
Helix 13	AB4	B	120	126	Right-handed alpha
Helix 14	AB5	B	148	152	Right-handed 310
Helix 15	AB6	B	191	196	Right-handed alpha
Helix 16	AB7	B	212	216	Right-handed 310
Helix 17	AB8	B	310	312	Right-handed 310
Helix 18	AB9	B	313	322	Right-handed alpha
Helix 19	AC1	B	344	348	Right-handed 310
Helix 20	AC2	C	71	75	Right-handed 310
Helix 21	AC3	C	77	82	Right-handed 310
Helix 22	AC4	C	120	126	Right-handed alpha
Helix 23	AC5	C	148	152	Right-handed 310
Helix 24	AC6	C	191	196	Right-handed alpha
Helix 25	AC7	C	212	216	Right-handed 310
Helix 26	AC8	C	290	294	Right-handed 310
Helix 27	AC9	C	310	312	Right-handed 310
Helix 28	AD1	C	313	322	Right-handed alpha
Helix 29	AD2	C	337	341	Right-handed 310
Helix 30	AD3	C	344	348	Right-handed 310
Helix 31	AD4	D	71	75	Right-handed 310
Helix 32	AD5	D	77	82	Right-handed 310
Helix 33	AD6	D	120	126	Right-handed alpha
Helix 34	AD7	D	148	152	Right-handed 310
Helix 35	AD8	D	191	196	Right-handed alpha
Helix 36	AD9	D	310	312	Right-handed 310
Helix 37	AE1	D	313	322	Right-handed alpha
Helix 38	AE2	D	344	348	Right-handed 310
Helix 39	AE3	E	187	193	Right-handed alpha
Helix 40	AE4	F	187	193	Right-handed alpha
Helix 41	AE5	G	187	193	Right-handed alpha
Helix 42	AE6	H	187	193	Right-handed alpha

There are 29 sheets in PDB entry 5CMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	41	43	anti-parallel
Strand 3	A	62	64	parallel
Strand 4	A	87	89	parallel
Strand 5	A	108	110	parallel
Strand 6	A	132	134	parallel
Strand 7	A	158	160	parallel
Strand 8	A	179	181	parallel
Strand 9	A	203	205	parallel
Strand 10	A	229	231	parallel
Strand 11	A	251	253	parallel
Strand 12	A	275	277	parallel
Strand 13	A	299	301	parallel
Strand 14	A	328	330	parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	41	43	anti-parallel
Strand 3	B	62	64	parallel
Strand 4	B	87	89	parallel
Strand 5	B	108	110	parallel
Strand 6	B	132	134	parallel
Strand 7	B	158	160	parallel
Strand 8	B	179	181	parallel
Strand 9	B	203	205	parallel
Strand 10	B	229	231	parallel
Strand 11	B	251	253	parallel
Strand 12	B	275	277	parallel
Strand 13	B	299	301	parallel
Strand 14	B	328	330	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	334	336	parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	38	first strand
Strand 2	C	41	43	anti-parallel
Strand 3	C	62	64	parallel
Strand 4	C	87	89	parallel
Strand 5	C	108	110	parallel
Strand 6	C	132	134	parallel
Strand 7	C	158	160	parallel
Strand 8	C	179	181	parallel
Strand 9	C	203	205	parallel
Strand 10	C	229	231	parallel
Strand 11	C	251	253	parallel
Strand 12	C	275	277	parallel
Strand 13	C	299	301	parallel
Strand 14	C	328	330	parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	41	43	anti-parallel
Strand 3	D	62	64	parallel
Strand 4	D	87	89	parallel
Strand 5	D	108	110	parallel
Strand 6	D	132	134	parallel
Strand 7	D	158	160	parallel
Strand 8	D	179	181	parallel
Strand 9	D	203	205	parallel
Strand 10	D	229	231	parallel
Strand 11	D	251	253	parallel
Strand 12	D	275	277	parallel
Strand 13	D	299	301	parallel
Strand 14	D	328	330	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	150	first strand
Strand 2	E	383	390	anti-parallel
Strand 3	E	375	380	anti-parallel
Strand 4	E	364	370	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	159	first strand
Strand 2	E	169	173	anti-parallel
Strand 3	E	181	185	anti-parallel
Strand 4	E	196	201	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	214	first strand
Strand 2	E	217	221	anti-parallel
Strand 3	E	227	232	anti-parallel
Strand 4	E	237	243	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	268	first strand
Strand 2	E	271	277	anti-parallel
Strand 3	E	284	290	anti-parallel
Strand 4	E	297	306	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	316	first strand
Strand 2	E	319	324	anti-parallel
Strand 3	E	338	344	anti-parallel
Strand 4	E	349	351	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	316	first strand
Strand 2	E	319	324	anti-parallel
Strand 3	E	338	344	anti-parallel
Strand 4	E	355	356	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	150	first strand
Strand 2	F	383	390	anti-parallel
Strand 3	F	375	380	anti-parallel
Strand 4	F	364	370	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	160	first strand
Strand 2	F	169	174	anti-parallel
Strand 3	F	181	185	anti-parallel
Strand 4	F	198	201	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	212	213	first strand
Strand 2	F	217	221	anti-parallel
Strand 3	F	227	232	anti-parallel
Strand 4	F	237	243	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	264	268	first strand
Strand 2	F	271	277	anti-parallel
Strand 3	F	284	290	anti-parallel
Strand 4	F	297	306	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	312	316	first strand
Strand 2	F	319	324	anti-parallel
Strand 3	F	338	344	anti-parallel
Strand 4	F	349	351	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	312	316	first strand
Strand 2	F	319	324	anti-parallel
Strand 3	F	338	344	anti-parallel
Strand 4	F	355	356	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	150	first strand
Strand 2	G	383	390	anti-parallel
Strand 3	G	375	380	anti-parallel
Strand 4	G	364	370	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	160	first strand
Strand 2	G	169	174	anti-parallel
Strand 3	G	181	185	anti-parallel
Strand 4	G	198	201	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	212	214	first strand
Strand 2	G	217	221	anti-parallel
Strand 3	G	227	232	anti-parallel
Strand 4	G	237	243	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	268	first strand
Strand 2	G	271	277	anti-parallel
Strand 3	G	284	290	anti-parallel
Strand 4	G	297	306	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	312	316	first strand
Strand 2	G	319	324	anti-parallel
Strand 3	G	338	344	anti-parallel
Strand 4	G	349	351	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	312	316	first strand
Strand 2	G	319	324	anti-parallel
Strand 3	G	338	344	anti-parallel
Strand 4	G	355	356	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	150	first strand
Strand 2	H	383	390	anti-parallel
Strand 3	H	375	380	anti-parallel
Strand 4	H	364	370	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	160	first strand
Strand 2	H	169	173	anti-parallel
Strand 3	H	181	185	anti-parallel
Strand 4	H	196	201	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	212	214	first strand
Strand 2	H	217	221	anti-parallel
Strand 3	H	227	232	anti-parallel
Strand 4	H	237	243	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	268	first strand
Strand 2	H	271	277	anti-parallel
Strand 3	H	284	290	anti-parallel
Strand 4	H	297	306	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	312	316	first strand
Strand 2	H	319	324	anti-parallel
Strand 3	H	338	344	anti-parallel
Strand 4	H	349	351	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	312	316	first strand
Strand 2	H	319	324	anti-parallel
Strand 3	H	338	344	anti-parallel
Strand 4	H	355	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CMN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CMN