Analysis of interatomic Contacts of Structural Units in PDB entry:
5CMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CMP entry

There are 4 chains in PDB entry 5CMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 29LEU 352
B
 SER 30LEU 352
C
 LYS 29ALA 350
D
 CYS 31TYR 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5CMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 75Right-handed 310
Helix 2
AA2
A
76 82Right-handed 310
Helix 3
AA3
A
120 126Right-handed alpha
Helix 4
AA4
A
191 196Right-handed alpha
Helix 5
AA5
A
212 216Right-handed 310
Helix 6
AA6
A
313 323Right-handed alpha
Helix 7
AA7
A
337 341Right-handed 310
Helix 8
AA8
A
344 348Right-handed 310
Helix 9
AA9
B
71 75Right-handed 310
Helix 10
AB1
B
76 82Right-handed 310
Helix 11
AB2
B
120 126Right-handed alpha
Helix 12
AB3
B
191 196Right-handed alpha
Helix 13
AB4
B
212 216Right-handed 310
Helix 14
AB5
B
313 323Right-handed alpha
Helix 15
AB6
B
337 341Right-handed 310
Helix 16
AB7
B
344 348Right-handed 310
Helix 17
AB8
C
71 75Right-handed 310
Helix 18
AB9
C
78 82Right-handed 310
Helix 19
AC1
C
120 126Right-handed alpha
Helix 20
AC2
C
191 196Right-handed alpha
Helix 21
AC3
C
313 322Right-handed alpha
Helix 22
AC4
C
337 341Right-handed 310
Helix 23
AC5
C
344 348Right-handed 310
Helix 24
AC6
D
71 75Right-handed 310
Helix 25
AC7
D
78 82Right-handed 310
Helix 26
AC8
D
120 126Right-handed alpha
Helix 27
AC9
D
191 196Right-handed alpha
Helix 28
AD1
D
212 216Right-handed 310
Helix 29
AD2
D
313 323Right-handed alpha
Helix 30
AD3
D
337 341Right-handed 310
Helix 31
AD4
D
344 348Right-handed 310
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There are 6 sheets in PDB entry 5CMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
41 43anti-parallel
Strand 3
A
62 64parallel
Strand 4
A
87 89parallel
Strand 5
A
108 110parallel
Strand 6
A
132 134parallel
Strand 7
A
158 160parallel
Strand 8
A
179 181parallel
Strand 9
A
203 205parallel
Strand 10
A
229 231parallel
Strand 11
A
251 253parallel
Strand 12
A
275 277parallel
Strand 13
A
299 301parallel
Strand 14
A
328 330parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
41 43anti-parallel
Strand 3
B
62 64parallel
Strand 4
B
87 89parallel
Strand 5
B
108 110parallel
Strand 6
B
132 134parallel
Strand 7
B
158 160parallel
Strand 8
B
179 181parallel
Strand 9
B
203 205parallel
Strand 10
B
229 231parallel
Strand 11
B
251 253parallel
Strand 12
B
275 277parallel
Strand 13
B
299 301parallel
Strand 14
B
328 330parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 336parallel
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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 38first strand
Strand 2
C
41 43anti-parallel
Strand 3
C
62 64parallel
Strand 4
C
87 89parallel
Strand 5
C
108 110parallel
Strand 6
C
132 134parallel
Strand 7
C
158 160parallel
Strand 8
C
179 181parallel
Strand 9
C
203 205parallel
Strand 10
C
229 231parallel
Strand 11
C
251 253parallel
Strand 12
C
275 277parallel
Strand 13
C
299 301parallel
Strand 14
C
328 330parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
307 308first strand
Strand 2
C
334 336parallel
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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 38first strand
Strand 2
D
41 43anti-parallel
Strand 3
D
62 64parallel
Strand 4
D
87 89parallel
Strand 5
D
108 110parallel
Strand 6
D
132 134parallel
Strand 7
D
158 160parallel
Strand 8
D
179 181parallel
Strand 9
D
203 205parallel
Strand 10
D
229 231parallel
Strand 11
D
251 253parallel
Strand 12
D
275 277parallel
Strand 13
D
299 301parallel
Strand 14
D
328 330parallel
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