Analysis of interatomic Contacts of Structural Units in PDB entry:
5CMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CMS entry

There are 18 chains in PDB entry 5CMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	THR 3	GLN 174
A	LYS 2	GLN 174
B	LYS 2	GLN 174
C	LYS 2	GLN 174
D	LYS 2	GLN 174
E	LYS 2	GLN 174
F	THR 3	GLN 174
G	THR 3	GLN 173
H	THR 3	GLN 174
I	THR 3	GLN 173
J	THR 3	GLN 174
K	THR 3	GLN 173
L	THR 3	GLN 173
M	THR 3	GLN 174
N	THR 3	GLN 173
O	THR 3	GLN 174
P	THR 3	GLN 174
Q	LYS 2	GLN 174

There are108 helices in PDB entry 5CMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	11	15	Right-handed 310
Helix 2	AA2	R	33	43	Right-handed alpha
Helix 3	AA3	R	43	58	Right-handed alpha
Helix 4	AA4	R	92	111	Right-handed alpha
Helix 5	AA5	R	129	148	Right-handed alpha
Helix 6	AA6	R	160	172	Right-handed alpha
Helix 7	AA7	A	11	15	Right-handed 310
Helix 8	AA8	A	33	43	Right-handed alpha
Helix 9	AA9	A	43	58	Right-handed alpha
Helix 10	AB1	A	92	111	Right-handed alpha
Helix 11	AB2	A	129	148	Right-handed alpha
Helix 12	AB3	A	160	173	Right-handed alpha
Helix 13	AB4	B	11	15	Right-handed 310
Helix 14	AB5	B	33	43	Right-handed alpha
Helix 15	AB6	B	43	58	Right-handed alpha
Helix 16	AB7	B	92	111	Right-handed alpha
Helix 17	AB8	B	129	147	Right-handed alpha
Helix 18	AB9	B	160	173	Right-handed alpha
Helix 19	AC1	C	11	15	Right-handed 310
Helix 20	AC2	C	33	43	Right-handed alpha
Helix 21	AC3	C	43	58	Right-handed alpha
Helix 22	AC4	C	92	111	Right-handed alpha
Helix 23	AC5	C	129	148	Right-handed alpha
Helix 24	AC6	C	160	173	Right-handed alpha
Helix 25	AC7	D	11	15	Right-handed 310
Helix 26	AC8	D	33	43	Right-handed alpha
Helix 27	AC9	D	43	58	Right-handed alpha
Helix 28	AD1	D	92	111	Right-handed alpha
Helix 29	AD2	D	129	148	Right-handed alpha
Helix 30	AD3	D	160	173	Right-handed alpha
Helix 31	AD4	E	11	15	Right-handed 310
Helix 32	AD5	E	33	43	Right-handed alpha
Helix 33	AD6	E	43	58	Right-handed alpha
Helix 34	AD7	E	92	111	Right-handed alpha
Helix 35	AD8	E	129	148	Right-handed alpha
Helix 36	AD9	E	160	173	Right-handed alpha
Helix 37	AE1	F	11	15	Right-handed 310
Helix 38	AE2	F	33	43	Right-handed alpha
Helix 39	AE3	F	43	58	Right-handed alpha
Helix 40	AE4	F	92	111	Right-handed alpha
Helix 41	AE5	F	129	148	Right-handed alpha
Helix 42	AE6	F	160	173	Right-handed alpha
Helix 43	AE7	G	11	15	Right-handed 310
Helix 44	AE8	G	33	43	Right-handed alpha
Helix 45	AE9	G	43	58	Right-handed alpha
Helix 46	AF1	G	92	111	Right-handed alpha
Helix 47	AF2	G	129	148	Right-handed alpha
Helix 48	AF3	G	160	173	Right-handed alpha
Helix 49	AF4	H	11	15	Right-handed 310
Helix 50	AF5	H	33	43	Right-handed alpha
Helix 51	AF6	H	43	58	Right-handed alpha
Helix 52	AF7	H	92	111	Right-handed alpha
Helix 53	AF8	H	129	148	Right-handed alpha
Helix 54	AF9	H	160	173	Right-handed alpha
Helix 55	AG1	I	11	15	Right-handed 310
Helix 56	AG2	I	33	43	Right-handed alpha
Helix 57	AG3	I	43	58	Right-handed alpha
Helix 58	AG4	I	92	111	Right-handed alpha
Helix 59	AG5	I	129	148	Right-handed alpha
Helix 60	AG6	I	160	171	Right-handed alpha
Helix 61	AG7	J	11	15	Right-handed 310
Helix 62	AG8	J	33	43	Right-handed alpha
Helix 63	AG9	J	43	58	Right-handed alpha
Helix 64	AH1	J	92	111	Right-handed alpha
Helix 65	AH2	J	129	148	Right-handed alpha
Helix 66	AH3	J	160	173	Right-handed alpha
Helix 67	AH4	K	11	15	Right-handed 310
Helix 68	AH5	K	33	43	Right-handed alpha
Helix 69	AH6	K	43	58	Right-handed alpha
Helix 70	AH7	K	92	111	Right-handed alpha
Helix 71	AH8	K	129	148	Right-handed alpha
Helix 72	AH9	K	160	172	Right-handed alpha
Helix 73	AI1	L	11	15	Right-handed 310
Helix 74	AI2	L	33	43	Right-handed alpha
Helix 75	AI3	L	43	58	Right-handed alpha
Helix 76	AI4	L	92	111	Right-handed alpha
Helix 77	AI5	L	129	148	Right-handed alpha
Helix 78	AI6	L	160	172	Right-handed alpha
Helix 79	AI7	M	11	15	Right-handed 310
Helix 80	AI8	M	33	43	Right-handed alpha
Helix 81	AI9	M	43	58	Right-handed alpha
Helix 82	AJ1	M	92	111	Right-handed alpha
Helix 83	AJ2	M	129	148	Right-handed alpha
Helix 84	AJ3	M	160	173	Right-handed alpha
Helix 85	AJ4	N	11	15	Right-handed 310
Helix 86	AJ5	N	33	43	Right-handed alpha
Helix 87	AJ6	N	43	58	Right-handed alpha
Helix 88	AJ7	N	92	111	Right-handed alpha
Helix 89	AJ8	N	129	148	Right-handed alpha
Helix 90	AJ9	N	160	173	Right-handed alpha
Helix 91	AK1	O	11	15	Right-handed 310
Helix 92	AK2	O	33	43	Right-handed alpha
Helix 93	AK3	O	43	58	Right-handed alpha
Helix 94	AK4	O	92	111	Right-handed alpha
Helix 95	AK5	O	129	148	Right-handed alpha
Helix 96	AK6	O	160	173	Right-handed alpha
Helix 97	AK7	P	11	15	Right-handed 310
Helix 98	AK8	P	33	43	Right-handed alpha
Helix 99	AK9	P	43	58	Right-handed alpha
Helix 100	AL1	P	92	111	Right-handed alpha
Helix 101	AL2	P	129	148	Right-handed alpha
Helix 102	AL3	P	160	173	Right-handed alpha
Helix 103	AL4	Q	11	15	Right-handed 310
Helix 104	AL5	Q	33	43	Right-handed alpha
Helix 105	AL6	Q	43	58	Right-handed alpha
Helix 106	AL7	Q	92	111	Right-handed alpha
Helix 107	AL8	Q	129	147	Right-handed alpha
Helix 108	AL9	Q	160	173	Right-handed alpha

There are 18 sheets in PDB entry 5CMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	5	9	first strand
Strand 2	R	153	158	parallel
Strand 3	R	115	118	parallel
Strand 4	R	19	24	parallel
Strand 5	R	77	82	parallel
Strand 6	R	65	68	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	153	158	parallel
Strand 3	A	115	118	parallel
Strand 4	A	19	24	parallel
Strand 5	A	77	82	parallel
Strand 6	A	65	69	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	153	158	parallel
Strand 3	B	115	118	parallel
Strand 4	B	19	24	parallel
Strand 5	B	77	82	parallel
Strand 6	B	65	69	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	153	158	parallel
Strand 3	C	115	118	parallel
Strand 4	C	19	24	parallel
Strand 5	C	77	82	parallel
Strand 6	C	65	69	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	9	first strand
Strand 2	D	153	158	parallel
Strand 3	D	115	118	parallel
Strand 4	D	19	24	parallel
Strand 5	D	77	82	parallel
Strand 6	D	65	69	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	153	158	parallel
Strand 3	E	115	118	parallel
Strand 4	E	19	24	parallel
Strand 5	E	77	82	parallel
Strand 6	E	65	69	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	9	first strand
Strand 2	F	153	158	parallel
Strand 3	F	115	118	parallel
Strand 4	F	19	24	parallel
Strand 5	F	77	82	parallel
Strand 6	F	65	68	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	9	first strand
Strand 2	G	153	158	parallel
Strand 3	G	115	118	parallel
Strand 4	G	19	24	parallel
Strand 5	G	77	82	parallel
Strand 6	G	65	68	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	153	158	parallel
Strand 3	H	115	118	parallel
Strand 4	H	19	24	parallel
Strand 5	H	77	82	parallel
Strand 6	H	65	69	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	9	first strand
Strand 2	I	153	158	parallel
Strand 3	I	115	118	parallel
Strand 4	I	19	24	parallel
Strand 5	I	77	82	parallel
Strand 6	I	65	68	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	9	first strand
Strand 2	J	153	158	parallel
Strand 3	J	115	118	parallel
Strand 4	J	19	24	parallel
Strand 5	J	77	82	parallel
Strand 6	J	65	68	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	9	first strand
Strand 2	K	153	158	parallel
Strand 3	K	115	118	parallel
Strand 4	K	19	24	parallel
Strand 5	K	77	82	parallel
Strand 6	K	65	68	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	9	first strand
Strand 2	L	153	158	parallel
Strand 3	L	115	118	parallel
Strand 4	L	19	24	parallel
Strand 5	L	77	82	parallel
Strand 6	L	65	68	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	9	first strand
Strand 2	M	153	158	parallel
Strand 3	M	115	118	parallel
Strand 4	M	19	24	parallel
Strand 5	M	77	82	parallel
Strand 6	M	65	68	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	9	first strand
Strand 2	N	153	158	parallel
Strand 3	N	115	118	parallel
Strand 4	N	19	24	parallel
Strand 5	N	77	82	parallel
Strand 6	N	65	69	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	5	9	first strand
Strand 2	O	153	158	parallel
Strand 3	O	115	118	parallel
Strand 4	O	19	24	parallel
Strand 5	O	77	82	parallel
Strand 6	O	65	68	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	5	9	first strand
Strand 2	P	153	158	parallel
Strand 3	P	115	118	parallel
Strand 4	P	19	24	parallel
Strand 5	P	77	82	parallel
Strand 6	P	65	68	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5	9	first strand
Strand 2	Q	153	158	parallel
Strand 3	Q	115	118	parallel
Strand 4	Q	19	24	parallel
Strand 5	Q	77	82	parallel
Strand 6	Q	65	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CMS