Analysis of interatomic Contacts of Structural Units in PDB entry:
5CNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CNJ entry

There are 2 chains in PDB entry 5CNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22ALA 488
B
 LYS 23ALA 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5CNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 73Right-handed alpha
Helix 2
AA2
A
94 102Right-handed alpha
Helix 3
AA3
A
103 106Right-handed 310
Helix 4
AA4
A
144 158Right-handed alpha
Helix 5
AA5
A
169 174Right-handed 310
Helix 6
AA6
A
187 202Right-handed alpha
Helix 7
AA7
A
216 231Right-handed alpha
Helix 8
AA8
A
246 259Right-handed alpha
Helix 9
AA9
A
271 285Right-handed alpha
Helix 10
AB1
A
300 305Right-handed alpha
Helix 11
AB2
A
307 312Right-handed alpha
Helix 12
AB3
A
324 333Right-handed alpha
Helix 13
AB4
A
344 353Right-handed alpha
Helix 14
AB5
A
356 360Right-handed 310
Helix 15
AB6
A
377 400Right-handed alpha
Helix 16
AB7
A
407 411Right-handed 310
Helix 17
AB8
A
414 422Right-handed alpha
Helix 18
AB9
A
423 425Right-handed 310
Helix 19
AC1
A
482 485Right-handed 310
Helix 20
AC2
B
58 74Right-handed alpha
Helix 21
AC3
B
94 103Right-handed alpha
Helix 22
AC4
B
104 107Right-handed 310
Helix 23
AC5
B
144 156Right-handed alpha
Helix 24
AC6
B
157 159Right-handed 310
Helix 25
AC7
B
170 174Right-handed 310
Helix 26
AC8
B
187 202Right-handed alpha
Helix 27
AC9
B
214 230Right-handed alpha
Helix 28
AD1
B
246 259Right-handed alpha
Helix 29
AD2
B
271 285Right-handed alpha
Helix 30
AD3
B
300 305Right-handed alpha
Helix 31
AD4
B
307 312Right-handed alpha
Helix 32
AD5
B
324 333Right-handed alpha
Helix 33
AD6
B
344 353Right-handed alpha
Helix 34
AD7
B
366 370Right-handed 310
Helix 35
AD8
B
377 400Right-handed alpha
Helix 36
AD9
B
407 411Right-handed 310
Helix 37
AE1
B
414 422Right-handed alpha
Helix 38
AE2
B
423 425Right-handed 310
Helix 39
AE3
B
462 464Right-handed 310
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There are 8 sheets in PDB entry 5CNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
84 90anti-parallel
Strand 3
A
32 38parallel
Strand 4
A
136 141parallel
Strand 5
A
162 164parallel
Strand 6
A
181 183parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
50 53anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 241first strand
Strand 2
A
206 212parallel
Strand 3
A
265 269parallel
Strand 4
A
290 293parallel
Strand 5
A
315 319parallel
Strand 6
A
452 460anti-parallel
Strand 7
A
466 475anti-parallel
Strand 8
A
478 480anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
A
440 442anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
84 90anti-parallel
Strand 3
B
32 38parallel
Strand 4
B
138 141parallel
Strand 5
B
162 164parallel
Strand 6
B
181 183parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
50 53anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 238first strand
Strand 2
B
206 211parallel
Strand 3
B
265 269parallel
Strand 4
B
290 293parallel
Strand 5
B
315 319parallel
Strand 6
B
453 460anti-parallel
Strand 7
B
466 474anti-parallel
Strand 8
B
478 480anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 429first strand
Strand 2
B
440 442anti-parallel
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