Analysis of interatomic Contacts of Structural Units in PDB entry:
5CNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CNL entry

There are 2 chains in PDB entry 5CNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0CYS 160
B
 GLY 23LYS 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5CNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 41Right-handed alpha
Helix 2
AA2
A
47 56Right-handed alpha
Helix 3
AA3
A
57 59Right-handed 310
Helix 4
AA4
A
60 74Right-handed alpha
Helix 5
AA5
A
75 83Right-handed alpha
Helix 6
AA6
B
25 41Right-handed alpha
Helix 7
AA7
B
47 56Right-handed alpha
Helix 8
AA8
B
57 59Right-handed 310
Helix 9
AA9
B
60 74Right-handed alpha
Helix 10
AB1
B
75 83Right-handed alpha
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There are 4 sheets in PDB entry 5CNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
104 116anti-parallel
Strand 4
A
96 101anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
104 116anti-parallel
Strand 4
A
121 134anti-parallel
Strand 5
A
144 154anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
86 91anti-parallel
Strand 3
B
104 116anti-parallel
Strand 4
B
121 134anti-parallel
Strand 5
B
144 153anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 101first strand
Strand 2
B
104 116anti-parallel
Strand 3
B
121 134anti-parallel
Strand 4
B
158 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il