Analysis of interatomic Contacts of Structural Units in PDB entry:
5CNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CNM entry

There is 1 chain in PDB entry 5CNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 30ASN 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5CNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 80Right-handed alpha
Helix 2
AA2
A
101 117Right-handed alpha
Helix 3
AA3
A
150 164Right-handed alpha
Helix 4
AA4
A
175 180Right-handed 310
Helix 5
AA5
A
195 208Right-handed alpha
Helix 6
AA6
A
220 237Right-handed alpha
Helix 7
AA7
A
253 265Right-handed alpha
Helix 8
AA8
A
277 291Right-handed alpha
Helix 9
AA9
A
306 311Right-handed alpha
Helix 10
AB1
A
313 318Right-handed alpha
Helix 11
AB2
A
330 339Right-handed alpha
Helix 12
AB3
A
350 360Right-handed alpha
Helix 13
AB4
A
389 412Right-handed alpha
Helix 14
AB5
A
419 424Right-handed alpha
Helix 15
AB6
A
426 434Right-handed alpha
Helix 16
AB7
A
435 438Right-handed 310
Helix 17
AB8
A
449 451Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5CNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
39 45parallel
Strand 4
A
142 146parallel
Strand 5
A
168 170parallel
Strand 6
A
187 189parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
57 60anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 247first strand
Strand 2
A
212 218parallel
Strand 3
A
271 275parallel
Strand 4
A
296 299parallel
Strand 5
A
321 325parallel
Strand 6
A
466 470anti-parallel
Strand 7
A
481 486anti-parallel
Strand 8
A
490 492anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
453 454anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il