Analysis of interatomic Contacts of Structural Units in PDB entry:
5CNS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CNS entry

There are 8 chains in PDB entry 5CNS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	ASP 736
B	ASN 4	GLY 737
C	LEU 5	ASP 736
D	ASN 4	GLY 737
E	ALA 1	LEU 375
F	ALA 1	LEU 375
G	ALA 1	LEU 375
H	ALA 1	LEU 375

There are207 helices in PDB entry 5CNS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	37	46	Right-handed alpha
Helix 3	AA3	A	55	69	Right-handed alpha
Helix 4	AA4	A	76	95	Right-handed alpha
Helix 5	AA5	A	101	112	Right-handed alpha
Helix 6	AA6	A	117	123	Right-handed alpha
Helix 7	AA7	A	124	133	Right-handed alpha
Helix 8	AA8	A	136	143	Right-handed 310
Helix 9	AA9	A	144	154	Right-handed alpha
Helix 10	AB1	A	168	181	Right-handed alpha
Helix 11	AB2	A	188	202	Right-handed alpha
Helix 12	AB3	A	208	215	Right-handed alpha
Helix 13	AB4	A	233	249	Right-handed alpha
Helix 14	AB5	A	278	291	Right-handed alpha
Helix 15	AB6	A	312	317	Right-handed alpha
Helix 16	AB7	A	325	329	Right-handed 310
Helix 17	AB8	A	340	349	Right-handed alpha
Helix 18	AB9	A	358	361	Right-handed 310
Helix 19	AC1	A	363	371	Right-handed alpha
Helix 20	AC2	A	371	385	Right-handed alpha
Helix 21	AC3	A	395	410	Right-handed alpha
Helix 22	AC4	A	418	423	Right-handed alpha
Helix 23	AC5	A	476	496	Right-handed alpha
Helix 24	AC6	A	500	511	Right-handed alpha
Helix 25	AC7	A	519	527	Right-handed alpha
Helix 26	AC8	A	536	563	Right-handed alpha
Helix 27	AC9	A	567	571	Right-handed 310
Helix 28	AD1	A	578	583	Right-handed alpha
Helix 29	AD2	A	584	590	Right-handed 310
Helix 30	AD3	A	598	610	Right-handed alpha
Helix 31	AD4	A	624	628	Right-handed 310
Helix 32	AD5	A	658	663	Right-handed alpha
Helix 33	AD6	A	668	672	Right-handed 310
Helix 34	AD7	A	675	689	Right-handed alpha
Helix 35	AD8	A	700	708	Right-handed 310
Helix 36	AD9	A	711	724	Right-handed alpha
Helix 37	AE1	B	18	30	Right-handed alpha
Helix 38	AE2	B	37	46	Right-handed alpha
Helix 39	AE3	B	55	69	Right-handed alpha
Helix 40	AE4	B	76	95	Right-handed alpha
Helix 41	AE5	B	101	112	Right-handed alpha
Helix 42	AE6	B	117	123	Right-handed alpha
Helix 43	AE7	B	124	135	Right-handed alpha
Helix 44	AE8	B	136	143	Right-handed 310
Helix 45	AE9	B	144	154	Right-handed alpha
Helix 46	AF1	B	168	181	Right-handed alpha
Helix 47	AF2	B	188	202	Right-handed alpha
Helix 48	AF3	B	208	215	Right-handed alpha
Helix 49	AF4	B	233	249	Right-handed alpha
Helix 50	AF5	B	278	291	Right-handed alpha
Helix 51	AF6	B	312	317	Right-handed alpha
Helix 52	AF7	B	325	329	Right-handed 310
Helix 53	AF8	B	340	349	Right-handed alpha
Helix 54	AF9	B	358	361	Right-handed 310
Helix 55	AG1	B	363	371	Right-handed alpha
Helix 56	AG2	B	371	385	Right-handed alpha
Helix 57	AG3	B	395	410	Right-handed alpha
Helix 58	AG4	B	418	423	Right-handed alpha
Helix 59	AG5	B	474	476	Right-handed 310
Helix 60	AG6	B	477	496	Right-handed alpha
Helix 61	AG7	B	500	511	Right-handed alpha
Helix 62	AG8	B	519	527	Right-handed alpha
Helix 63	AG9	B	536	563	Right-handed alpha
Helix 64	AH1	B	567	571	Right-handed 310
Helix 65	AH2	B	578	583	Right-handed alpha
Helix 66	AH3	B	584	590	Right-handed 310
Helix 67	AH4	B	598	610	Right-handed alpha
Helix 68	AH5	B	624	628	Right-handed 310
Helix 69	AH6	B	658	663	Right-handed alpha
Helix 70	AH7	B	668	672	Right-handed 310
Helix 71	AH8	B	675	689	Right-handed alpha
Helix 72	AH9	B	700	708	Right-handed 310
Helix 73	AI1	B	710	724	Right-handed alpha
Helix 74	AI2	C	18	30	Right-handed alpha
Helix 75	AI3	C	37	46	Right-handed alpha
Helix 76	AI4	C	55	69	Right-handed alpha
Helix 77	AI5	C	76	95	Right-handed alpha
Helix 78	AI6	C	101	112	Right-handed alpha
Helix 79	AI7	C	117	123	Right-handed alpha
Helix 80	AI8	C	124	135	Right-handed alpha
Helix 81	AI9	C	136	143	Right-handed 310
Helix 82	AJ1	C	144	155	Right-handed alpha
Helix 83	AJ2	C	168	181	Right-handed alpha
Helix 84	AJ3	C	188	202	Right-handed alpha
Helix 85	AJ4	C	208	215	Right-handed alpha
Helix 86	AJ5	C	233	249	Right-handed alpha
Helix 87	AJ6	C	277	292	Right-handed alpha
Helix 88	AJ7	C	312	317	Right-handed alpha
Helix 89	AJ8	C	325	329	Right-handed 310
Helix 90	AJ9	C	340	349	Right-handed alpha
Helix 91	AK1	C	357	361	Right-handed 310
Helix 92	AK2	C	363	371	Right-handed alpha
Helix 93	AK3	C	371	385	Right-handed alpha
Helix 94	AK4	C	395	410	Right-handed alpha
Helix 95	AK5	C	417	423	Right-handed alpha
Helix 96	AK6	C	476	496	Right-handed alpha
Helix 97	AK7	C	500	511	Right-handed alpha
Helix 98	AK8	C	519	527	Right-handed alpha
Helix 99	AK9	C	536	563	Right-handed alpha
Helix 100	AL1	C	567	571	Right-handed 310
Helix 101	AL2	C	578	583	Right-handed alpha
Helix 102	AL3	C	584	590	Right-handed 310
Helix 103	AL4	C	598	610	Right-handed alpha
Helix 104	AL5	C	624	628	Right-handed 310
Helix 105	AL6	C	658	663	Right-handed alpha
Helix 106	AL7	C	668	672	Right-handed 310
Helix 107	AL8	C	675	689	Right-handed alpha
Helix 108	AL9	C	700	708	Right-handed 310
Helix 109	AM1	C	710	724	Right-handed alpha
Helix 110	AM2	D	18	30	Right-handed alpha
Helix 111	AM3	D	37	45	Right-handed alpha
Helix 112	AM4	D	55	69	Right-handed alpha
Helix 113	AM5	D	76	95	Right-handed alpha
Helix 114	AM6	D	101	112	Right-handed alpha
Helix 115	AM7	D	117	123	Right-handed alpha
Helix 116	AM8	D	124	133	Right-handed alpha
Helix 117	AM9	D	136	143	Right-handed 310
Helix 118	AN1	D	144	154	Right-handed alpha
Helix 119	AN2	D	168	181	Right-handed alpha
Helix 120	AN3	D	188	202	Right-handed alpha
Helix 121	AN4	D	208	215	Right-handed alpha
Helix 122	AN5	D	233	249	Right-handed alpha
Helix 123	AN6	D	278	291	Right-handed alpha
Helix 124	AN7	D	312	317	Right-handed alpha
Helix 125	AN8	D	325	329	Right-handed 310
Helix 126	AN9	D	340	349	Right-handed alpha
Helix 127	AO1	D	363	371	Right-handed alpha
Helix 128	AO2	D	371	385	Right-handed alpha
Helix 129	AO3	D	395	410	Right-handed alpha
Helix 130	AO4	D	418	423	Right-handed alpha
Helix 131	AO5	D	476	496	Right-handed alpha
Helix 132	AO6	D	500	511	Right-handed alpha
Helix 133	AO7	D	519	527	Right-handed alpha
Helix 134	AO8	D	536	563	Right-handed alpha
Helix 135	AO9	D	567	571	Right-handed 310
Helix 136	AP1	D	578	583	Right-handed alpha
Helix 137	AP2	D	584	590	Right-handed 310
Helix 138	AP3	D	598	610	Right-handed alpha
Helix 139	AP4	D	624	628	Right-handed 310
Helix 140	AP5	D	658	663	Right-handed alpha
Helix 141	AP6	D	668	672	Right-handed 310
Helix 142	AP7	D	675	687	Right-handed alpha
Helix 143	AP8	D	700	708	Right-handed 310
Helix 144	AP9	D	711	724	Right-handed alpha
Helix 145	AQ1	E	34	46	Right-handed alpha
Helix 146	AQ2	E	49	53	Right-handed 310
Helix 147	AQ3	E	57	65	Right-handed alpha
Helix 148	AQ4	E	66	96	Right-handed alpha
Helix 149	AQ5	E	101	128	Right-handed alpha
Helix 150	AQ6	E	132	143	Right-handed alpha
Helix 151	AQ7	E	143	170	Right-handed alpha
Helix 152	AQ8	E	185	206	Right-handed alpha
Helix 153	AQ9	E	206	221	Right-handed alpha
Helix 154	AR1	E	224	254	Right-handed alpha
Helix 155	AR2	E	258	291	Right-handed alpha
Helix 156	AR3	E	300	319	Right-handed alpha
Helix 157	AR4	E	332	339	Right-handed 310
Helix 158	AR5	E	366	372	Right-handed alpha
Helix 159	AR6	F	11	15	Right-handed 310
Helix 160	AR7	F	33	46	Right-handed alpha
Helix 161	AR8	F	49	53	Right-handed 310
Helix 162	AR9	F	57	65	Right-handed alpha
Helix 163	AS1	F	66	96	Right-handed alpha
Helix 164	AS2	F	101	128	Right-handed alpha
Helix 165	AS3	F	132	143	Right-handed alpha
Helix 166	AS4	F	143	171	Right-handed alpha
Helix 167	AS5	F	185	206	Right-handed alpha
Helix 168	AS6	F	206	221	Right-handed alpha
Helix 169	AS7	F	224	254	Right-handed alpha
Helix 170	AS8	F	258	268	Right-handed alpha
Helix 171	AS9	F	268	291	Right-handed alpha
Helix 172	AT1	F	300	319	Right-handed alpha
Helix 173	AT2	F	332	334	Right-handed 310
Helix 174	AT3	F	335	340	Right-handed alpha
Helix 175	AT4	F	366	372	Right-handed alpha
Helix 176	AT5	G	11	15	Right-handed 310
Helix 177	AT6	G	33	46	Right-handed alpha
Helix 178	AT7	G	49	53	Right-handed 310
Helix 179	AT8	G	55	65	Right-handed alpha
Helix 180	AT9	G	66	96	Right-handed alpha
Helix 181	AU1	G	101	128	Right-handed alpha
Helix 182	AU2	G	132	143	Right-handed alpha
Helix 183	AU3	G	143	171	Right-handed alpha
Helix 184	AU4	G	185	206	Right-handed alpha
Helix 185	AU5	G	206	221	Right-handed alpha
Helix 186	AU6	G	224	254	Right-handed alpha
Helix 187	AU7	G	258	291	Right-handed alpha
Helix 188	AU8	G	300	319	Right-handed alpha
Helix 189	AU9	G	332	339	Right-handed 310
Helix 190	AV1	G	366	372	Right-handed alpha
Helix 191	AV2	H	11	15	Right-handed 310
Helix 192	AV3	H	34	46	Right-handed alpha
Helix 193	AV4	H	49	53	Right-handed 310
Helix 194	AV5	H	57	65	Right-handed alpha
Helix 195	AV6	H	66	96	Right-handed alpha
Helix 196	AV7	H	97	99	Right-handed 310
Helix 197	AV8	H	101	128	Right-handed alpha
Helix 198	AV9	H	132	143	Right-handed alpha
Helix 199	AW1	H	143	171	Right-handed alpha
Helix 200	AW2	H	185	206	Right-handed alpha
Helix 201	AW3	H	206	221	Right-handed alpha
Helix 202	AW4	H	224	254	Right-handed alpha
Helix 203	AW5	H	258	268	Right-handed alpha
Helix 204	AW6	H	268	291	Right-handed alpha
Helix 205	AW7	H	300	319	Right-handed alpha
Helix 206	AW8	H	332	338	Right-handed 310
Helix 207	AW9	H	366	372	Right-handed alpha

There are 36 sheets in PDB entry 5CNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	6	8	anti-parallel
Strand 3	A	53	54	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	460	468	anti-parallel
Strand 3	A	513	518	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	460	468	anti-parallel
Strand 3	A	225	229	anti-parallel
Strand 4	A	253	257	parallel
Strand 5	A	302	307	parallel
Strand 6	A	334	339	parallel
Strand 7	A	412	416	parallel
Strand 8	A	728	729	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	273	274	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	298	299	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	390	394	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	645	first strand
Strand 2	A	652	655	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	699	first strand
Strand 2	A	732	734	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	710	first strand
Strand 2	F	361	362	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	6	8	anti-parallel
Strand 3	B	53	54	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	460	468	anti-parallel
Strand 3	B	513	518	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	460	468	anti-parallel
Strand 3	B	225	229	anti-parallel
Strand 4	B	253	257	parallel
Strand 5	B	302	307	parallel
Strand 6	B	334	339	parallel
Strand 7	B	412	416	parallel
Strand 8	B	728	729	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	298	299	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	390	394	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	645	first strand
Strand 2	B	652	655	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	699	first strand
Strand 2	B	732	734	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	6	8	anti-parallel
Strand 3	C	53	54	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	206	first strand
Strand 2	C	460	468	anti-parallel
Strand 3	C	513	518	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	206	first strand
Strand 2	C	460	468	anti-parallel
Strand 3	C	225	229	anti-parallel
Strand 4	C	253	257	parallel
Strand 5	C	302	307	parallel
Strand 6	C	334	339	parallel
Strand 7	C	412	416	parallel
Strand 8	C	728	729	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	298	299	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	355	first strand
Strand 2	C	391	394	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	645	first strand
Strand 2	C	652	655	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	697	699	first strand
Strand 2	C	732	734	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	6	8	anti-parallel
Strand 3	D	53	54	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	206	first strand
Strand 2	D	460	468	anti-parallel
Strand 3	D	513	518	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	206	first strand
Strand 2	D	460	468	anti-parallel
Strand 3	D	225	229	anti-parallel
Strand 4	D	253	257	parallel
Strand 5	D	302	307	parallel
Strand 6	D	334	339	parallel
Strand 7	D	412	416	parallel
Strand 8	D	728	729	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	294	first strand
Strand 2	D	298	299	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	356	first strand
Strand 2	D	390	394	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	645	first strand
Strand 2	D	652	655	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	697	699	first strand
Strand 2	D	732	734	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	709	710	first strand
Strand 2	G	361	362	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	177	first strand
Strand 2	E	180	184	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	173	177	first strand
Strand 2	F	180	184	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	177	first strand
Strand 2	G	180	184	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	173	177	first strand
Strand 2	H	180	184	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CNS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CNS