Analysis of interatomic Contacts of Structural Units in PDB entry:
5CO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CO8 entry

There are 5 chains in PDB entry 5CO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 T 0 T 30
C
 GLY 2SER 465
X
 A 1 C 16
A
 GLY 2SER 465
H
 T 16 A 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5CO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
6 11Right-handed alpha
Helix 2
AA2
C
18 30Right-handed alpha
Helix 3
AA3
C
41 47Right-handed alpha
Helix 4
AA4
C
54 71Right-handed alpha
Helix 5
AA5
C
99 110Right-handed alpha
Helix 6
AA6
C
120 131Right-handed alpha
Helix 7
AA7
C
142 147Right-handed alpha
Helix 8
AA8
C
174 179Right-handed alpha
Helix 9
AA9
C
185 196Right-handed alpha
Helix 10
AB1
C
209 219Right-handed alpha
Helix 11
AB2
C
236 250Right-handed alpha
Helix 12
AB3
C
270 279Right-handed alpha
Helix 13
AB4
C
284 295Right-handed alpha
Helix 14
AB5
C
302 315Right-handed alpha
Helix 15
AB6
C
317 341Right-handed alpha
Helix 16
AB7
C
372 375Right-handed 310
Helix 17
AB8
C
385 391Right-handed alpha
Helix 18
AB9
C
393 397Right-handed 310
Helix 19
AC1
C
445 452Right-handed alpha
Helix 20
AC2
C
452 465Right-handed alpha
Helix 21
AC3
A
6 11Right-handed alpha
Helix 22
AC4
A
18 30Right-handed alpha
Helix 23
AC5
A
42 47Right-handed alpha
Helix 24
AC6
A
54 71Right-handed alpha
Helix 25
AC7
A
99 110Right-handed alpha
Helix 26
AC8
A
120 131Right-handed alpha
Helix 27
AC9
A
142 146Right-handed 310
Helix 28
AD1
A
174 179Right-handed alpha
Helix 29
AD2
A
185 196Right-handed alpha
Helix 30
AD3
A
209 219Right-handed alpha
Helix 31
AD4
A
236 250Right-handed alpha
Helix 32
AD5
A
270 279Right-handed alpha
Helix 33
AD6
A
284 295Right-handed alpha
Helix 34
AD7
A
302 315Right-handed alpha
Helix 35
AD8
A
317 341Right-handed alpha
Helix 36
AD9
A
372 375Right-handed 310
Helix 37
AE1
A
385 391Right-handed alpha
Helix 38
AE2
A
445 452Right-handed alpha
Helix 39
AE3
A
452 464Right-handed alpha
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There are 4 sheets in PDB entry 5CO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
168 173anti-parallel
Strand 3
C
151 157anti-parallel
Strand 4
C
136 138parallel
Strand 5
C
34 38parallel
Strand 6
C
73 78parallel
Strand 7
C
113 116parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
364 370first strand
Strand 2
C
378 384anti-parallel
Strand 3
C
439 444anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
151 157anti-parallel
Strand 4
A
136 138parallel
Strand 5
A
34 38parallel
Strand 6
A
73 78parallel
Strand 7
A
113 116parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 370first strand
Strand 2
A
378 384anti-parallel
Strand 3
A
439 444anti-parallel
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