Analysis of interatomic Contacts of Structural Units in PDB entry:
5COG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5COG entry

There are 2 chains in PDB entry 5COG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLU 170
B
 ARG 2GLU 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5COG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 24Right-handed alpha
Helix 2
AA2
A
25 28Right-handed 310
Helix 3
AA3
A
29 33Right-handed 310
Helix 4
AA4
A
43 67Right-handed alpha
Helix 5
AA5
A
79 81Right-handed 310
Helix 6
AA6
A
82 95Right-handed alpha
Helix 7
AA7
A
98 120Right-handed alpha
Helix 8
AA8
A
121 127Right-handed alpha
Helix 9
AA9
A
132 137Right-handed 310
Helix 10
AB1
A
141 150Right-handed alpha
Helix 11
AB2
A
150 168Right-handed alpha
Helix 12
AB3
B
6 24Right-handed alpha
Helix 13
AB4
B
25 28Right-handed 310
Helix 14
AB5
B
29 33Right-handed 310
Helix 15
AB6
B
43 67Right-handed alpha
Helix 16
AB7
B
82 95Right-handed alpha
Helix 17
AB8
B
98 120Right-handed alpha
Helix 18
AB9
B
121 127Right-handed alpha
Helix 19
AC1
B
131 137Right-handed 310
Helix 20
AC2
B
141 150Right-handed alpha
Helix 21
AC3
B
150 168Right-handed alpha
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There are no sheets in PDB entry 5COG
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il